Dear experts, I'm a new user in freesurfer and mainly interest in the motor area cortical thickness. I have several question:
* Using tksurfer SubFolder lh inflated Curvature---> lh.curv / lh.thickness / lh.volume ... *1. How can I detect the motor area location (i.e. translate the give coordination's)? 2. What are the units of the *.curv *curvature pattern map? 3. All curvature maps are given in Red/Green colors, can it be changed? 4. How can I insert color bar? Using *view>color scale bar* insert fixed bar only (ranged -5-5; not Red/Greed colored)
I would like to have the full statistic report for given hemisphere;Using the command : *mris_anatomical_stats -a SubFolder /label/lh.aparc.annot -b lh >>out.txt *seems to provide only partial information, are there other parameters that should be added?
Thank you in advance for your help Moran
Hi Moran
1. Use the architectonic labels in the label dir (e.g. lh.BA4a.label, lh.BA4p.label, etc...)
2. Mean curvature is in 1/mm
3. You can always load a curv map as an overlay (file menu) then use different colormaps.
4. See 3 and change the overlay thresholds
what parameters do you mean?
cheers Bruce
On Fri, 10 Feb 2012, Moran Artzi wrote:
Dear experts,
I'm a new user in freesurfer and mainly interest in the motor area cortical thickness. I have several question:
Using tksurfer SubFolder lh inflated Curvature---> lh.curv / lh.thickness / lh.volume ...
- How can I detect the motor area location (i.e. translate the give
coordination's)? 2. What are the units of the .curv curvature pattern map? 3. All curvature maps are given in Red/Green colors, can it be changed? 4. How can I insert color bar? Using view>color scale bar insert fixed bar only (ranged -5-5; not Red/Greed colored)
I would like to have the full statistic report for given hemisphere;Using the command : mris_anatomical_stats -a SubFolder /label/lh.aparc.annot -b lh >>out.txt seems to provide only partial information, are there other parameters that should be added?
Thank you in advance for your help Moran
freesurfer@nmr.mgh.harvard.edu