Dear FreeSurfer,
I'd like to generate a spreadsheet with the cortical parcellations measures (grey matter volume, surface area) and including all subjects in my subjects directory. I seem to recall that there was a script which did this, but cannot find it in the mailing list archives.
Do you recall the name of the script/program? Or is it easier to call mris_anatomical_stats on each subject and concatenate the results?
+glenn
------------------------------------ Here miracles become marvels, and marvels recurring wonders. -- William Beebe
Dr. Glenn Lawyer +352 661 967 244 Instituttgruppe for psykiatri Seksjon Vinderen PB 85 Vinderen 0319 Oslo http://folk.uio.no/davidgl
Glenn,
I think you're thinking of aparcstats2table (and asegstats2table).
Beware of a bug in aparcstats2table: if you decide to use the older a2005s parcellations, its possible some subject will not have parcellations in some areas, and aparcstats2table leaves the value blank instead of inserting '0', thus messing the column number for that subject. This doesnt happen with the default aparc though.
Nick
On Tue, 2008-12-09 at 11:47 +0100, d.g.lawyer@medisin.uio.no wrote:
Dear FreeSurfer,
I'd like to generate a spreadsheet with the cortical parcellations measures (grey matter volume, surface area) and including all subjects in my subjects directory. I seem to recall that there was a script which did this, but cannot find it in the mailing list archives.
Do you recall the name of the script/program? Or is it easier to call mris_anatomical_stats on each subject and concatenate the results?
+glenn
Here miracles become marvels, and marvels recurring wonders. -- William Beebe
Dr. Glenn Lawyer +352 661 967 244 Instituttgruppe for psykiatri Seksjon Vinderen PB 85 Vinderen 0319 Oslo http://folk.uio.no/davidgl
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d.g.lawyer＠medisin.uio.no -
Nick Schmansky