It is seg faulting at the defect correction stage which is before the FLAIR would be used. At this point it should be identical to the T1-only analysis. Check your commands to make sure they are the same except for the FLAIR part

On 1/16/2020 9:55 AM, Swanson,Clayton wrote:

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Hello FreeSurfer Developers, I am attempting to perform a recon-all using a T2-FLAIR image. I have already run this particular participant through recon-all with their T1 image without error. While running the recon-all using the T2 the process exited with error stating a segmentation fault.

Is there any way to run fix this problem on my end or better understand why this would be occurring?

I have uploaded the recon-all.log for your convenience.

Thank you, Clayton

________________________________ Clayton Swanson MS Graduate Research Assistant & PhD Student Sensorimotor Neuroimaging Laboratory Colorado State University Office: (970) 491-6160 Clayton.Swanson@colostate.edumailto:Clayton.Swanson@colostate.edu

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