Can you send us your configuration file (mytracula.conf) and log file (it should be under scripts/trac-all.log). I can take a look.

Priti

Hi,

I am trying to run the last step of TRACULA. I used the command line:

% trac-all -path -c mytracula.conf

Here is all the info I got on the screen:

INFO: SUBJECTS_DIR is /home/sata2/FreeSurfer/Subjects.Verio INFO: Diffusion root is /home/xkang/DTI/ Actual FREESURFER_HOME /home/local/freesurfer-v510 trac-paths -c /home/xkang/DTI//S0006/scripts/dmrirc.local -log /home/xkang/DTI//S0006/scripts/trac-all.log -cmd /home/xkang/DTI//S0006/scripts/trac-all.cmd #------------------------------------- /usr/local/freesurfer/bin/trac-paths #------------------------------------- #@# Path reconstruction Fri Jun 15 10:47:44 PDT 2012 #------------------------------------- trac-paths finished without error at Fri Jun 15 10:47:44 PDT 2012

I didn't see "dpath" under the subject's directory. Seems nothing has been done. I already ran the "trac-all -prep" and "trac-all -bedp". I have the directories dlable, dmri and dmir.bedpostX, but not dpath. Can any body help where the problems are?

I use DTI images in NIFTI format and the resolution is 2x2x2, which is not the same as that of the FreeSurfer orig.mgz. Probably this is fine.

Thanks.

XJ Kang _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer