Thanks. But as far as I see,when I use --tcl <file>, it avoids execution of other tcl files such as eccen-flat.tcl. What I had in my mind was "adding" a tcl.

Sorry for all the troubles ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas N. Greve dgreve@mgh.harvard.edu Sent: Friday, July 17, 2020 12:32 PM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] rtview - loading a tcl file

I just added --tcl to rtview. The new version is in dev

On 7/17/2020 12:23 PM, Nasr, Shahin,Ph.D. wrote: Hi Surfers, I was wondering if there is a way to load a tcl file with rtview command. Specifically, I need to change the color table to RYGB, remove the aparc, ... .

Thanks

_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Unfortunately it is not working. My command is like this:

rtview --s SUBJ --real real.nii --imag imag.nii --eccen --hemi lh --fsig fsig.nii --flat --ss 0 --tcl rtv.tcl

rtv.tcl (attached to this email) has just 2 lines as below:

labl_remove_all set colscale 8

Thanks ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas N. Greve dgreve@mgh.harvard.edu Sent: Friday, July 17, 2020 1:04 PM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] rtview - loading a tcl file

ok, try now

On 7/17/2020 12:49 PM, Nasr, Shahin,Ph.D. wrote: Thanks. But as far as I see,when I use --tcl <file>, it avoids execution of other tcl files such as eccen-flat.tcl. What I had in my mind was "adding" a tcl.

Sorry for all the troubles ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas N. Greve dgreve@mgh.harvard.edumailto:dgreve@mgh.harvard.edu Sent: Friday, July 17, 2020 12:32 PM To: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] rtview - loading a tcl file

I just added --tcl to rtview. The new version is in dev

On 7/17/2020 12:23 PM, Nasr, Shahin,Ph.D. wrote: Hi Surfers, I was wondering if there is a way to load a tcl file with rtview command. Specifically, I need to change the color table to RYGB, remove the aparc, ... .

Thanks

_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

tksurfer SUBJ lh inflated -aparc -tcl /usr/local/freesurfer/dev/lib/tcl/eccen-flat.tcl

as you can see rtv.tcl is dropped.

________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas N. Greve dgreve@mgh.harvard.edu Sent: Friday, July 17, 2020 1:22 PM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] rtview - loading a tcl file

What is the tksurfer command that is output?

On 7/17/2020 1:13 PM, Nasr, Shahin,Ph.D. wrote: Unfortunately it is not working. My command is like this:

rtview --s SUBJ --real real.nii --imag imag.nii --eccen --hemi lh --fsig fsig.nii --flat --ss 0 --tcl rtv.tcl

rtv.tcl (attached to this email) has just 2 lines as below:

labl_remove_all set colscale 8

Thanks ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas N. Greve dgreve@mgh.harvard.edumailto:dgreve@mgh.harvard.edu Sent: Friday, July 17, 2020 1:04 PM To: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] rtview - loading a tcl file

ok, try now

On 7/17/2020 12:49 PM, Nasr, Shahin,Ph.D. wrote: Thanks. But as far as I see,when I use --tcl <file>, it avoids execution of other tcl files such as eccen-flat.tcl. What I had in my mind was "adding" a tcl.

Sorry for all the troubles ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas N. Greve dgreve@mgh.harvard.edumailto:dgreve@mgh.harvard.edu Sent: Friday, July 17, 2020 12:32 PM To: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] rtview - loading a tcl file

I just added --tcl to rtview. The new version is in dev

On 7/17/2020 12:23 PM, Nasr, Shahin,Ph.D. wrote: Hi Surfers, I was wondering if there is a way to load a tcl file with rtview command. Specifically, I need to change the color table to RYGB, remove the aparc, ... .

Thanks

_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

the tksurfer look correct as below

tksurfer SUBJ lh inflated -aparc -tcl /usr/local/freesurfer/dev/lib/tcl/eccen-flat.tcl -tcl rtv.tcl

But, eccen-flat.tcl is not executed and I have a blank inflated map. When I drop --tcl rtv.tcl, everything works. ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas N. Greve dgreve@mgh.harvard.edu Sent: Friday, July 17, 2020 1:38 PM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] rtview - loading a tcl file

sorry, they again

On 7/17/2020 1:27 PM, Nasr, Shahin,Ph.D. wrote: tksurfer SUBJ lh inflated -aparc -tcl /usr/local/freesurfer/dev/lib/tcl/eccen-flat.tcl

as you can see rtv.tcl is dropped.

________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas N. Greve dgreve@mgh.harvard.edumailto:dgreve@mgh.harvard.edu Sent: Friday, July 17, 2020 1:22 PM To: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] rtview - loading a tcl file

What is the tksurfer command that is output?

On 7/17/2020 1:13 PM, Nasr, Shahin,Ph.D. wrote: Unfortunately it is not working. My command is like this:

rtview --s SUBJ --real real.nii --imag imag.nii --eccen --hemi lh --fsig fsig.nii --flat --ss 0 --tcl rtv.tcl

rtv.tcl (attached to this email) has just 2 lines as below:

labl_remove_all set colscale 8

Thanks ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas N. Greve dgreve@mgh.harvard.edumailto:dgreve@mgh.harvard.edu Sent: Friday, July 17, 2020 1:04 PM To: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] rtview - loading a tcl file

ok, try now

On 7/17/2020 12:49 PM, Nasr, Shahin,Ph.D. wrote: Thanks. But as far as I see,when I use --tcl <file>, it avoids execution of other tcl files such as eccen-flat.tcl. What I had in my mind was "adding" a tcl.

Sorry for all the troubles ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas N. Greve dgreve@mgh.harvard.edumailto:dgreve@mgh.harvard.edu Sent: Friday, July 17, 2020 12:32 PM To: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] rtview - loading a tcl file

I just added --tcl to rtview. The new version is in dev

On 7/17/2020 12:23 PM, Nasr, Shahin,Ph.D. wrote: Hi Surfers, I was wondering if there is a way to load a tcl file with rtview command. Specifically, I need to change the color table to RYGB, remove the aparc, ... .

Thanks

_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

now the tksurfer command is like this:

tksurfer SUBJ lh inflated -aparc -tcl /usr/local/freesurfer/dev/lib/tcl/eccen-flat.tcl -tcl rtview.229508.tcl

and rtv.tcl is not applied.

________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas N. Greve dgreve@mgh.harvard.edu Sent: Friday, July 17, 2020 1:45 PM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] rtview - loading a tcl file

OK, try again:)

On 7/17/2020 1:42 PM, Nasr, Shahin,Ph.D. wrote: the tksurfer look correct as below

tksurfer SUBJ lh inflated -aparc -tcl /usr/local/freesurfer/dev/lib/tcl/eccen-flat.tcl -tcl rtv.tcl

But, eccen-flat.tcl is not executed and I have a blank inflated map. When I drop --tcl rtv.tcl, everything works. ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas N. Greve dgreve@mgh.harvard.edumailto:dgreve@mgh.harvard.edu Sent: Friday, July 17, 2020 1:38 PM To: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] rtview - loading a tcl file

sorry, they again

On 7/17/2020 1:27 PM, Nasr, Shahin,Ph.D. wrote: tksurfer SUBJ lh inflated -aparc -tcl /usr/local/freesurfer/dev/lib/tcl/eccen-flat.tcl

as you can see rtv.tcl is dropped.

________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas N. Greve dgreve@mgh.harvard.edumailto:dgreve@mgh.harvard.edu Sent: Friday, July 17, 2020 1:22 PM To: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] rtview - loading a tcl file

What is the tksurfer command that is output?

On 7/17/2020 1:13 PM, Nasr, Shahin,Ph.D. wrote: Unfortunately it is not working. My command is like this:

rtview --s SUBJ --real real.nii --imag imag.nii --eccen --hemi lh --fsig fsig.nii --flat --ss 0 --tcl rtv.tcl

rtv.tcl (attached to this email) has just 2 lines as below:

labl_remove_all set colscale 8

Thanks ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas N. Greve dgreve@mgh.harvard.edumailto:dgreve@mgh.harvard.edu Sent: Friday, July 17, 2020 1:04 PM To: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] rtview - loading a tcl file

ok, try now

On 7/17/2020 12:49 PM, Nasr, Shahin,Ph.D. wrote: Thanks. But as far as I see,when I use --tcl <file>, it avoids execution of other tcl files such as eccen-flat.tcl. What I had in my mind was "adding" a tcl.

Sorry for all the troubles ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas N. Greve dgreve@mgh.harvard.edumailto:dgreve@mgh.harvard.edu Sent: Friday, July 17, 2020 12:32 PM To: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] rtview - loading a tcl file

I just added --tcl to rtview. The new version is in dev

On 7/17/2020 12:23 PM, Nasr, Shahin,Ph.D. wrote: Hi Surfers, I was wondering if there is a way to load a tcl file with rtview command. Specifically, I need to change the color table to RYGB, remove the aparc, ... .

Thanks

_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer