Hi Tyler, I'm not sure what you mean by the stats being in a particular space. I had understood it to mean the space that volumes would be measured in. Is that right? If so, then the volumes will be measured in the space of the input, whatever input you supplied.
doug
ps. I'm copying the freesurfer list here so that others may benefit from the answer and so that the answer (not just the question) are searchable in are archive.
blazey@artsci.wustl.edu wrote:
Hi Doug,
Thank you for your quick response. I realize now, however, that my question didn't quite get at what I was asking. What I meant to ask was whether or not the stats outputted by FreeSurfer are in input space, not whether they were in native space per se. So if I were register a session to an atlas before putting it through FreeSurfer, would FreeSurfer output stats in my atlas space? Sorry for my mistake and thanks again.
- Tyler
yes, they are measured in native space.
doug
blazey@artsci.wustl.edu wrote:
Hi All,
Are the volume stats outputted by FreeSurfer in native space or in FreeSurfer's space? According to some older mailing list questions, they are in native space, but I wanted to make sure that this was still the case. Thanks in advance for any help.
- Tyler
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Doug,
You understood correctly. Thanks for your help!
- Tyler
Hi Tyler, I'm not sure what you mean by the stats being in a particular space. I had understood it to mean the space that volumes would be measured in. Is that right? If so, then the volumes will be measured in the space of the input, whatever input you supplied.
doug
ps. I'm copying the freesurfer list here so that others may benefit from the answer and so that the answer (not just the question) are searchable in are archive.
blazey@artsci.wustl.edu wrote:
Hi Doug,
Thank you for your quick response. I realize now, however, that my question didn't quite get at what I was asking. What I meant to ask was whether or not the stats outputted by FreeSurfer are in input space, not whether they were in native space per se. So if I were register a session to an atlas before putting it through FreeSurfer, would FreeSurfer output stats in my atlas space? Sorry for my mistake and thanks again.
- Tyler
yes, they are measured in native space.
doug
blazey@artsci.wustl.edu wrote:
Hi All,
Are the volume stats outputted by FreeSurfer in native space or in FreeSurfer's space? According to some older mailing list questions, they are in native space, but I wanted to make sure that this was still the case. Thanks in advance for any help.
- Tyler
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
freesurfer@nmr.mgh.harvard.edu
-
blazey＠artsci.wustl.edu -
Douglas N Greve