External Email - Use Caution
I've put in my license.txt file in the freesurfer file but, freeview doesn't work
'Freesurfer quits unexpectedly'
Below there is the reason of the quit.
------------------------------------- Translated Report (Full Report Below) -------------------------------------
Process: freeview [71133] Path: /Applications/freesurfer/*/Freeview.app/Contents/MacOS/freeview Identifier: org.martinos.freeview Version: 7.3.2 (100) Code Type: X86-64 (Translated) Parent Process: launchd [1] User ID: 501
Date/Time: 2024-04-14 01:16:02.7236 +0900 OS Version: macOS 14.4.1 (23E224) Report Version: 12 Anonymous UUID: FC5C035F-28AB-6F06-73F3-E7191C14B2D7
Sleep/Wake UUID: E0A8B706-B7C5-4F83-AEE3-9FB1B80DF90F
Time Awake Since Boot: 60000 seconds Time Since Wake: 15301 seconds
System Integrity Protection: enabled
Notes: PC register does not match crashing frame (0x0 vs 0x100EA3B98)
Crashed Thread: 0 Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV) Exception Codes: KERN_INVALID_ADDRESS at 0x5367756265442f7b -> 0x0000756265442f7b (possible pointer authentication failure) Exception Codes: 0x0000000000000001, 0x5367756265442f7b
Termination Reason: Namespace SIGNAL, Code 11 Segmentation fault: 11 Terminating Process: exc handler [71133]
VM Region Info: 0x756265442f7b is not in any region. Bytes after previous region: 23511813074812 Bytes before following region: 11219858346117 REGION TYPE START - END [ VSIZE] PRT/MAX SHRMOD REGION DETAIL MALLOC_NANO 600000000000-600020000000 [512.0M] rw-/rwx SM=PRV ---> GAP OF 0x1f9698f00000 BYTES MALLOC_TINY 7f96b8f00000-7f96b9000000 [ 1024K] rw-/rwx SM=PRV
Error Formulating Crash Report: PC register does not match crashing frame (0x0 vs 0x100EA3B98)
Thread 0 Crashed:: Dispatch queue: com.apple.main-thread 0 freeview 0x100ea3b98 0x100cb0000 + 2046872 1 QtWidgets 0x11d14a413 QWidget::event(QEvent*) + 1283 2 QtWidgets 0x11d2895a4 QMainWindow::event(QEvent*) + 276 3 QtWidgets 0x11d0fa0b7 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 247 4 QtWidgets 0x11d0faffc QApplication::notify(QObject*, QEvent*) + 508 5 QtCore 0x11dfbc1da QCoreApplication::notifyInternal2(QObject*, QEvent*) + 170 6 QtWidgets 0x11d161de4 0x11d0ee000 + 474596 7 QtWidgets 0x11d15fd5a 0x11d0ee000 + 466266 8 QtWidgets 0x11d0fa0b7 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 247 9 QtWidgets 0x11d0faffc QApplication::notify(QObject*, QEvent*) + 508 10 QtCore 0x11dfbc1da QCoreApplication::notifyInternal2(QObject*, QEvent*) + 170 11 QtGui 0x11eef482d QGuiApplicationPrivate::processGeometryChangeEvent(QWindowSystemInterfacePrivate::GeometryChangeEvent*) + 493 12 QtGui 0x11eef5036 QGuiApplicationPrivate::processWindowScreenChangedEvent(QWindowSystemInterfacePrivate::WindowScreenChangedEvent*) + 470 13 QtGui 0x11ef4d29c 0x11ee6c000 + 922268 14 libqcocoa.dylib 0x11c866a50 0x11c81d000 + 301648 15 libqcocoa.dylib 0x11c85f8c9 0x11c81d000 + 272585 16 libqcocoa.dylib 0x11c85f37c 0x11c81d000 + 271228 17 QtGui 0x11ef3e93e QWindowPrivate::create(bool, unsigned long long) + 206 18 QtWidgets 0x11d138d9d QWidgetPrivate::create() + 1037 19 QtWidgets 0x11d136881 QWidget::create(unsigned long long, bool, bool) + 321 20 QtWidgets 0x11d1388e7 QWidgetPrivate::createWinId() + 103 21 QtWidgets 0x11d1388e7 QWidgetPrivate::createWinId() + 103 22 QtWidgets 0x11d1388e7 QWidgetPrivate::createWinId() + 103 23 QtWidgets 0x11d1388e7 QWidgetPrivate::createWinId() + 103 24 QtWidgets 0x11d1388e7 QWidgetPrivate::createWinId() + 103 25 QtWidgets 0x11d1388e7 QWidgetPrivate::createWinId() + 103 26 QtWidgets 0x11d139631 QWidget::winId() const + 65 27 freeview 0x100fab964 0x100cb0000 + 3127652 28 freeview 0x100fab88f 0x100cb0000 + 3127439 29 freeview 0x100d3b59f 0x100cb0000 + 570783 30 freeview 0x100e236cc 0x100cb0000 + 1521356 31 freeview 0x100e263e5 0x100cb0000 + 1532901 32 freeview 0x100e97a1a 0x100cb0000 + 1997338 33 freeview 0x100e8efa3 0x100cb0000 + 1961891 34 freeview 0x100dc82e5 0x100cb0000 + 1147621 35 dyld 0x2119d1366 start + 1942
Thread 1:: com.apple.rosetta.exceptionserver 0 runtime 0x7ff7fff6e494 0x7ff7fff6a000 + 17556
Thread 2: 0 runtime 0x7ff7fff8c94c 0x7ff7fff6a000 + 141644
Thread 3: 0 runtime 0x7ff7fff8c94c 0x7ff7fff6a000 + 141644
Thread 4: 0 runtime 0x7ff7fff8c94c 0x7ff7fff6a000 + 141644
Thread 5: 0 runtime 0x7ff7fff8c94c 0x7ff7fff6a000 + 141644
Thread 0 crashed with X86 Thread State (64-bit): rax: 0x5367756265442f73 rbx: 0x0000000316760cd0 rcx: 0x000000011d14a403 rdx: 0x000000011d14b178 rdi: 0x00007ffc9ccd7698 rsi: 0x000000031675f5f8 rbp: 0x000000031675f290 rsp: 0x000000031675f280 r8: 0x0000000000000841 r9: 0x0000000000000000 r10: 0x000000011c8c74a8 r11: 0x00007ff81b0573cf r12: 0x00007f96d8f46680 r13: 0x0000000316760cd0 r14: 0x000000031675f5f8 r15: 0x000000031675f5f8 rip: <unavailable> rfl: 0x0000000000000217 tmp0: 0x0000000111b6c154 tmp1: 0x000000011d14a413 tmp2: 0x000000011d77b594
Binary Images: 0x2119cb000 - 0x211a5bfff dyld (*) <899f1e34-b624-3162-8003-04daa6829461> /usr/lib/dyld 0x11c3da000 - 0x11c3e6fff libobjc-trampolines.dylib (*) <3d9756e6-f86a-324d-bfd7-dc2d59c27956> /usr/lib/libobjc-trampolines.dylib 0x11c64e000 - 0x11c655fff libqmacjp2.dylib (*) <41234a69-0606-3f7d-ac82-499b68e7ca40> /Applications/freesurfer/*/Freeview.app/Contents/PlugIns/imageformats/libqmacjp2.dylib 0x11c636000 - 0x11c63dfff libqtga.dylib (*) <4f81c0d1-a27e-3ad1-848f-f6d98b196553> /Applications/freesurfer/*/Freeview.app/Contents/PlugIns/imageformats/libqtga.dylib 0x11c591000 - 0x11c598fff libqicns.dylib (*) <cf2b53cc-5f03-3dcf-b1dc-d5b19cc7b39e> /Applications/freesurfer/*/Freeview.app/Contents/PlugIns/imageformats/libqicns.dylib 0x12416c000 - 0x1241d7fff libqtiff.dylib (*) <a588fa3d-680f-33b2-b1b3-02a035bd7cad> /Applications/freesurfer/*/Freeview.app/Contents/PlugIns/imageformats/libqtiff.dylib 0x123e00000 - 0x123e6ffff libqjpeg.dylib (*) <fb2e4cb6-67fd-3b9d-94d9-d0f3053fc895> /Applications/freesurfer/*/Freeview.app/Contents/PlugIns/imageformats/libqjpeg.dylib 0x11c576000 - 0x11c57dfff libqmacheif.dylib (*) <e76b1e74-e944-34d2-8d84-5cf2834a81d0> /Applications/freesurfer/*/Freeview.app/Contents/PlugIns/imageformats/libqmacheif.dylib 0x11c559000 - 0x11c560fff libqico.dylib (*) <794fb25c-3196-3e6b-aef6-714be0814505> /Applications/freesurfer/*/Freeview.app/Contents/PlugIns/imageformats/libqico.dylib 0x123f1a000 - 0x123fa9fff libqwebp.dylib (*) <eca0ac78-e7ba-3a03-aeca-2be5c17b3900> /Applications/freesurfer/*/Freeview.app/Contents/PlugIns/imageformats/libqwebp.dylib 0x11c541000 - 0x11c548fff libqwbmp.dylib (*) <01c3f1c0-9acd-317c-947e-a49f4e3d27fc> /Applications/freesurfer/*/Freeview.app/Contents/PlugIns/imageformats/libqwbmp.dylib 0x11c4da000 - 0x11c4e1fff libqgif.dylib (*) <bcc35720-04d0-304a-a77b-a1037536d0c7> /Applications/freesurfer/*/Freeview.app/Contents/PlugIns/imageformats/libqgif.dylib 0x11c5ba000 - 0x11c5e1fff libqmacstyle.dylib (*) <5d5fd017-f4d1-3b54-9845-648d0af93171> /Applications/freesurfer/*/Freeview.app/Contents/PlugIns/styles/libqmacstyle.dylib 0x11c81d000 - 0x11c8b8fff libqcocoa.dylib (*) <ea4d92c7-1e56-3035-973a-cc1b9e855893> /Applications/freesurfer/*/Freeview.app/Contents/PlugIns/platforms/libqcocoa.dylib 0x11d0ee000 - 0x11d59dfff org.qt-project.QtWidgets (6.4) <0c19fe5b-8080-3277-b0d7-db86b1abfa73> /Applications/freesurfer/*/Freeview.app/Contents/Frameworks/QtWidgets.framework/Versions/A/QtWidgets 0x11ee6c000 - 0x11f537fff org.qt-project.QtGui (6.4) <9c994073-fbbb-32e0-8f98-4ba06dd0b45c> /Applications/freesurfer/*/Freeview.app/Contents/Frameworks/QtGui.framework/Versions/A/QtGui 0x11df50000 - 0x11e447fff org.qt-project.QtCore (6.4) <e2b9aa6f-b72b-3985-846f-c337ba7fbfbe> /Applications/freesurfer/*/Freeview.app/Contents/Frameworks/QtCore.framework/Versions/A/QtCore 0x11c684000 - 0x11c707fff org.qt-project.QtDBus (6.4) <ce1dbd3c-3df5-3b52-a631-8c079db6bbe9> /Applications/freesurfer/*/Freeview.app/Contents/Frameworks/QtDBus.framework/Versions/A/QtDBus 0x7ff7fff6a000 - 0x7ff7fff99fff runtime (*) <cac146cd-fadd-39a0-8bd7-30c2e15d10cf> /usr/libexec/rosetta/runtime 0x11ba9a000 - 0x11baedfff libRosettaRuntime (*) <8a85f070-3849-3b55-adde-143cc5902f92> /Library/Apple/*/libRosettaRuntime 0x100cb0000 - 0x10237bfff org.martinos.freeview (7.3.2) <9f2f99e0-7cdf-3b5d-a8c3-7152207d0e6a> /Applications/freesurfer/*/Freeview.app/Contents/MacOS/freeview 0x0 - 0xffffffffffffffff ??? (*) <00000000-0000-0000-0000-000000000000> ??? 0x7ff81affe000 - 0x7ff81c42bff5 com.apple.AppKit (6.9) <4905ef83-f061-3c82-bc30-70a4def63eee> /System/Library/Frameworks/AppKit.framework/Versions/C/AppKit
External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 0 thread_create: 0 thread_set_state: 0
VM Region Summary: ReadOnly portion of Libraries: Total=549.7M resident=0K(0%) swapped_out_or_unallocated=549.7M(100%) Writable regions: Total=1.3G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.3G(100%)
VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Activity Tracing 256K 1 ColorSync 224K 25 CoreGraphics 8K 2 CoreServices 192K 1 Foundation 16K 1 Kernel Alloc Once 8K 1 MALLOC 955.2M 34 MALLOC guard page 192K 12 Rosetta Arena 4096K 2 Rosetta Generic 1256K 311 Rosetta IndirectBranch 512K 1 Rosetta JIT 128.0M 1 Rosetta Return Stack 100K 10 Rosetta Thread Context 100K 10 STACK GUARD 16K 4 Stack 10.1M 5 Stack Guard 56.0M 1 VM_ALLOCATE 308K 20 VM_ALLOCATE (reserved) 4K 1 reserved VM address space (unallocated) __CTF 824 1 __DATA 264.2M 393 __DATA_CONST 19.7M 227 __DATA_DIRTY 815K 115 __FONT_DATA 2352 1 __LINKEDIT 180.3M 24 __OBJC_RO 71.7M 1 __OBJC_RW 2193K 2 __TEXT 369.4M 411 dyld private memory 260K 2 mapped file 138.6M 76 shared memory 800K 13 =========== ======= ======= TOTAL 2.2G 1709 TOTAL, minus reserved VM space 2.2G 1709
----------- Full Report -----------
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Model: MacBookPro17,1, BootROM 10151.101.3, proc 8:4:4 processors, 8 GB, SMC Graphics: Apple M1, Apple M1, Built-In Display: Color LCD, 2560 x 1600 Retina, Main, MirrorOff, Online Display: C32JG5x, 2560 x 1440 (QHD/WQHD - Wide Quad High Definition), MirrorOff, Online Memory Module: LPDDR4, Hynix AirPort: spairport_wireless_card_type_wifi (0x14E4, 0x4378), wl0: Jan 13 2024 03:06:59 version 18.20.440.9.7.8.167 FWID 01-7be24857 AirPort: Bluetooth: Version (null), 0 services, 0 devices, 0 incoming serial ports Network Service: Wi-Fi, AirPort, en0 USB Device: USB31Bus USB Device: USB3.0 Hub USB Device: USB2.0 Hub USB Device: USB Keyboard USB Device: USB 2.0 Hub USB Device: USB 10/100 LAN USB Device: USB Optical Mouse USB Device: USB31Bus Thunderbolt Bus: MacBook Pro, Apple Inc. Thunderbolt Bus: MacBook Pro, Apple Inc.
You’re running MacOS Sonoma (14.X) which was not out when 7.3.2 was released in 2022, i.e., 7.3.2 was not tested on anything newer than MacOS 12.X as listed on the download page under https://surfer.nmr.mgh.harvard.edu/fswiki/rel7downloads. 7.3.2 release
Linux OS: CentOS7, CentOS8, Ubuntu18, Ubuntu20, Ubuntu22 Mac OS: 10.14, 10.15, 11.X, 12.X (Intel binaries).
Since you are running on a Silicon Mac with an M1 chip, you can try downloading and installing the following development build from March 2024, however it is not a release and so may be unstable,
https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/dev/freesurfer-macOS-...
I would not expect freesurfer commands like recon-all to work since your machine has 8G of RAM to run both the OS and then any applications on top of that.
- R.
On Apr 14, 2024, at 07:28, 이준하 <dlwnsgk1105@naver.commailto:dlwnsgk1105@naver.com> wrote:
External Email - Use Caution
I've put in my license.txt file in the freesurfer file but, freeview doesn't work
'Freesurfer quits unexpectedly'
freesurfer@nmr.mgh.harvard.edu