hmm, I'm not sure you can specify -a and -l. Not sure what it would mean. Try taking the -a out. Does that file exist?

On Fri, 2 Jun 2006, adam walczak wrote:

Hello,

I am trying to run mris_anatomical_stats using a label that I have created in tksurfer, but I get a strange error when I run the command.

mris_anatomical_stats -mgz -a label/rh.aparc.annot -l label/rh_stg.label -b wraw_KH_MAE3_4 rh inflated INFO: assuming MGZ format for volumes. computing statistics for each annotation in label/rh.aparc.annot. limiting computations to label label/rh_stg.label. reading volume /cajal/public/programs/freesurfer/subjects/wraw_KH_MAE3_4/mri/wm.mgz... zcat: /cajal/public/programs/freesurfer/subjects/wraw_KH_MAE3_4/mri/wm.mgz.gz: No such file or directory mghRead(/cajal/public/programs/freesurfer/subjects/wraw_KH_MAE3_4/mri/wm.mgz, -1): read error mris_anatomical_stats: could not read input volume /cajal/public/programs/freesurfer/subjects/wraw_KH_MAE3_4/mri/wm.mgz

Did I do something wrong on the command? It works when I don't include the label flag.

Thanks,

Adam

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