Hi freesurfer crew,
I found some details through this website http://www.stat.uchicago.edu/faculty/InMemoriam/worsley/research/surfstat/in... about cortical thickness maps with freesurfer. I have done some reading but can't really make much sense of how I might do this for a single subject through freesurfer. I have already done autorecon 2 and 3 and so have the cortical thickness stats but would like to put it into a map such as this one:
[image: [Click to enlarge image]]http://www.stat.uchicago.edu/faculty/InMemoriam/worsley/research/surfstat/figs/FS.jpg
Could you possibly advise on how I might go about this? Would be much appreciated.
Many thanks and all the best, Hugh
Hi Hugh if you mean a single subject map, just bring up tksurfer and load the thickness as an overlay
cheers Bruce On Fri, 24 Jan 2014, Hugh Pemberton wrote:
Hi freesurfer crew, I found some details through thiswebsite http://www.stat.uchicago.edu/faculty/InMemoriam/worsley/research/su rfstat/index.htm about cortical thickness maps with freesurfer. I have done some reading but can't really make much sense of how I might do this for a single subject through freesurfer. I have already done autorecon 2 and 3 and so have the cortical thickness stats but would like to put it into a map such as this one: [Click to enlarge image] Could you possibly advise on how I might go about this? Would be much appreciated. Many thanks and all the best, Hugh
what do you want to do? I think surfstat is for cross subject statistical analysis doug
On 01/23/2014 11:19 PM, Hugh Pemberton wrote:
Hi freesurfer crew, I found some details through this website http://www.stat.uchicago.edu/faculty/InMemoriam/worsley/research/surfstat/in... about cortical thickness maps with freesurfer. I have done some reading but can't really make much sense of how I might do this for a single subject through freesurfer. I have already done autorecon 2 and 3 and so have the cortical thickness stats but would like to put it into a map such as this one: [Click to enlarge image] http://www.stat.uchicago.edu/faculty/InMemoriam/worsley/research/surfstat/figs/FS.jpg Could you possibly advise on how I might go about this? Would be much appreciated. Many thanks and all the best, Hugh
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