FreeSurfer 6.0 is not available yet, but you can download the development version to take advantage of this functionality. Cheers, Eugenio

Juan Eugenio Iglesias Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/

On 10 Jun 2016, at 18:10, shi yao wang <wangshiyao2009@gmail.commailto:wangshiyao2009@gmail.com> wrote:

Dear FSL expert: Firstly, I would like to thank for the reply from Douglas. Thank you for your suggestion! aparcstats2table is working!.

Then, I have another question about the brainstem substructures. According to the guideline, https://surfer.nmr.mgh.harvard.edu/fswiki/MatlabRuntime I download the environment and successfully installed. However, when I running command " recon-all -s subject -brainstem-structures"

it shows wrong message

"ERROR: Flag -brainstem-structures unrecognized. -s 201 -brainstem-structures"

So how can I fix it? Is that due to FSL version problem? If yes, how can I update to freesurfer 6.0?

thanks! Lawrence Emory.

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