Hi List, Hi Developers,
a few days ago I switched our lab over to 3.0.4 from 3.0.3 (both Freesurfer-Linux-centos4_x86_64-stable-pub-v3.0.N-full versions, running on SuSE 10.1, x86_64). Here are my impressions:
1) Scuba and tksurfer now work out of the box, cool! (my system had freeglut problems)
2) fslview is missing; this script called fslview_exe (which is still around in the new version) this small script made sure the right libraries are accessible for flview_exe; I copied it over from v3.0.3 and everything is fine. See below for a copy of the script. (I use fslview to fine tune bet). And another fsl related observation, the fsl version shipped is the 32bit one, maybe thr 64bit build might seem abetter fit for the 64bit freesurfer version.
3) the nice modification Doug made for mri_nu_correct.mni did not make it to 3.0.4. That is my download of 3.0.4 contains mir_nu_correct.mni v 1.3 2005/12/08 01:27:21, instead of v 1.5 2006/11/03 19:59:55. I just copied the modified version from 3.0.3 over; it works fine and looks better with my single channel surface coil recons. 4) it is a really great tool, thanks for all the work and especially the support on this list.
aloha Sebastian
----- cut me ----- #!/bin/sh
LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${FSLDIR}/lib export LD_LIBRARY_PATH
$FSLDIR/bin/fslview_exe $@
------ cut me -----
Sebastian,
Thank you for pointing-out the excluded items. I have updated the distributions so that those items are now included (fslview, and the updated mri_nu_correct.mni). Note: the 32bit RH9 fsl distribution is included with Freesurfer because FSL's 64bit FC5 distribution does not work with Centos4 (a libstdc++ version problem).
Nick
Hi List, Hi Developers,
a few days ago I switched our lab over to 3.0.4 from 3.0.3 (both Freesurfer-Linux-centos4_x86_64-stable-pub-v3.0.N-full versions, running on SuSE 10.1, x86_64). Here are my impressions:
- Scuba and tksurfer now work out of the box, cool! (my system had
freeglut problems)
- fslview is missing; this script called fslview_exe (which is still
around in the new version) this small script made sure the right libraries are accessible for flview_exe; I copied it over from v3.0.3 and everything is fine. See below for a copy of the script. (I use fslview to fine tune bet). And another fsl related observation, the fsl version shipped is the 32bit one, maybe thr 64bit build might seem abetter fit for the 64bit freesurfer version.
- the nice modification Doug made for mri_nu_correct.mni did not make
it to 3.0.4. That is my download of 3.0.4 contains mir_nu_correct.mni v 1.3 2005/12/08 01:27:21, instead of v 1.5 2006/11/03 19:59:55. I just copied the modified version from 3.0.3 over; it works fine and looks better with my single channel surface coil recons. 4) it is a really great tool, thanks for all the work and especially the support on this list.
aloha Sebastian
----- cut me ----- #!/bin/sh
LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${FSLDIR}/lib export LD_LIBRARY_PATH
$FSLDIR/bin/fslview_exe $@
------ cut me -----
Sebastian Moeller
Tel.: 04 21 - 2 18 - 78 38 oder 96 91 Fax.: 04 21 - 2 18 - 90 04 GSM: 01 62 - 3 25 45 59 moeller@brain.uni-bremen.de
AG Kreiter / FB 2 Institut fuer Hirnforschung III Abteilung Theoretische Neurobiologie Universitaet Bremen Biogarten Hochschulring 16a Postfach 33 04 40 28359 Bremen
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Nick Schmansky -
Sebastian Moeller