Hi Eli,

I can confirm this is a bug. We'll fix it very soon.

Best,

Ruopeng

On 9/20/19 4:14 PM, Rockers, Elijah D. wrote:

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Hello, it's possible I found a bug in freeview:

I'm using the overlay_color option with freeview. Specifically I am trying to use both the "truncate" and "inverse" options in a command line call to freeview for a pipeline I am building. The documentation says that I can apply more than one, delimited by commas .... however I have found that if I attempt to use both truncate and inverse, it seems to be only applying whichever one appears last on the list.

In an interactive instance of freeview, doing everything manually, I have no problems. Just seems to be an issue with the command line call. Any suggestions on how I might proceed in this case?

-Eli

Houston Methodist. Leading Medicine.

Houston Methodist is ranked by /U.S. News & World Report/ as the No. 1 hospital in Texas and among the top 20 hospitals nationwide. Houston Methodist is the only nationally ranked Honor Roll hospital in the state and is designated as a Magnet hospital for excellence in nursing.

houstonmethodist.org https://www.houstonmethodist.org/| twitter.com/MethodistHosp https://twitter.com/MethodistHosp | facebook.com/HoustonMethodist https://www.facebook.com/houstonmethodist/

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Dear Eli,

could you add the command line you used and the FreeSurfer version (e.g., output of `cat ${FREESURFER_HOME}/VERSION`)?

Thanks,

Tim

On September 20, 2019 at 10:14 PM "Rockers, Elijah D." edrockers@houstonmethodist.org wrote:

    External Email - Use Caution        

Hello, it's possible I found a bug in freeview:

I'm using the overlay_color option with freeview. Specifically I am trying to use both the "truncate" and "inverse" options in a command line call to freeview for a pipeline I am building. The documentation says that I can apply more than one, delimited by commas .... however I have found that if I attempt to use both truncate and inverse, it seems to be only applying whichever one appears last on the list.

In an interactive instance of freeview, doing everything manually, I have no problems. Just seems to be an issue with the command line call. Any suggestions on how I might proceed in this case?

-Eli

Houston Methodist. Leading Medicine. Houston Methodist is ranked by U.S. News & World Report as the No. 1 hospital in Texas and among the top 20 hospitals nationwide. Houston Methodist is the only nationally ranked Honor Roll hospital in the state and is designated as a Magnet hospital for excellence in nursing. houstonmethodist.org | twitter.com/MethodistHosp | facebook.com/HoustonMethodist ***CONFIDENTIALITY NOTICE*** This e-mail is the property of Houston Methodist and/or its relevant affiliates and may contain restricted and privileged material for the sole use of the intended recipient(s). Any review, use, distribution or disclosure by others is strictly prohibited. If you are not the intended recipient (or authorized to receive for the recipient), please contact the sender and delete all copies of the message. Thank you. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer