Dear Tracula developers
I thought I had nearly reached the end of tracula processing. However, when I perform the step,
trac-all -stat -c dmrirc_ind_mni_cvs_all_stats.all
I receive this error message
.
Base name of output files: /work/imagingC/Rowe/p00363/freesurfer/all/subs_tracts/stats/lh.cst_AS.avg33_ cvs_flt
Text file with list of individual inputs: /work/imagingC/Rowe/p00363/freesurfer/all/subs_tracts/stats/lh.cst_AS.avg33_ cvs_flt.inputs.txt
Loading output reference volume from /home/spj24/app/freesurfer/subjects/cvs_avg35
corRead(): can't open file /home/spj24/app/freesurfer/subjects/cvs_avg35/COR-.info
ERROR: Could not read /home/spj24/app/freesurfer/subjects/cvs_avg35
There is no file called COR-.info in the directory /home/spj24/app/freesurfer/subjects/cvs_avg35/
I have commented nearly all lines from the file dmrirc_ind_mni_cvs_all_stats.all to leave a minimum configuration file and then the script runs without error. However, in that case the stats directory created only contains files related to avg33_mni_bbr ( and mni_flt if I add the switch set doregflt = 1). There are no cvs files.
I am using tracula.update.centos4_x86_64.5.3.2014_05_26 in freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0. I performed all tracula processing steps before stats without the tracula.update.centos4_x86_64.5.3.2014_05_26, and then added the update to perform the stat step.
Thanks for your help,
Simon
freesurfer@nmr.mgh.harvard.edu