Hi Ben

you need to rerun autorecon3 also otherwise some of the results will be new and some old and the surfaces/overlays (like thickness) will be inconsistent

cheers Bruce On Wed, 12 Feb 2020, Benjamin Ineichen wrote:

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Dear Freesurfer experts,

I edited the brainmask.mgz to erase some dura which caused problems with the pial surface in a subject. I then re-ran recon-all using: recon-all -qcache -s test1_edit -autorecon2

However, the recon-all finished with errors. Attached the log and error files. What is the problem?

Thanks!

/Ben

-- ____________________________________ Benjamin Victor Ineichen, MD PhD Karolinska Institutet Center for Molecular Medicine Stockholm, Sweden ineichen@protonmail.ch +41 76 391 04 01

Dr. med. et Dr. rer. nat. ETH Benjamin Victor Ineichen Karolinska Institutet Center for Molecular Medicine Stockholm, Sweden ineichen@protonmail.ch +41 76 391 04 01