Hello all, This may be a newbie question but I couldn't find any information relating to automated overlay data extraction on Freesurfer. I tried searching the wiki page and the email archives with no luck. I have already used tkregister2 to align the freesurfer volume and the functional volume. I was wondering if there was an automated method of extracting the functional overlay values based on the Freesurfer parcellation atlas and it's thickness values. Thank you for your help, -Thang
Try mri_segstats.
doug
Nguyen, Thang Q wrote:
Hello all,
This may be a newbie question but I couldn't find any information relating to automated overlay data extraction on Freesurfer. I tried searching the wiki page and the email archives with no luck. I have already used tkregister2 to align the freesurfer volume and the functional volume. I was wondering if there was an automated method of extracting the functional overlay values based on the Freesurfer parcellation atlas and it's thickness values.
Thank you for your help,
-Thang
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Doug Greve -
Nguyen, Thang Q