Thanks Bruce, It seems there are some display bugs on the server running freesurfer. In addition to the vanishing label (the label option was on), the scatter plots were messed up. After transferring the data to a different server it seems to be ok. Not sure what the issue is. ilana
______________________ If you can't be kind, be vague •••••••••••••••••••••••••••••••••••• Sent from my iPhone
On Apr 4, 2011, at 10:23, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Ilana,
it looks fine to me. Is it a left hemisphere label? If so, it looks like superior temporal gyrus. Make sure that label display is turned on in the tksurfer interface (the default may be off). It's one of the buttons on the top right.
cheers Bruce
On Sat, 2 Apr 2011, Ilana Hairston wrote:
sorry for the delay (can't ftp from the server). the file is attached
On 2 April 2011 12:33, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
can you email us the label?
On Sat, 2 Apr 2011, Ilana Hairston wrote:
sorry, i probably should have said that this was on the fsaverage, after
glmfit. basically i wanted to create a VOI and extract a stats table for it.
On 1 April 2011 22:33, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Ilana,
usually a bizarre labeling means the annot is out of date. Try running recon-all with -make all on that subject and see if it needs to recreate anything.
Not sure what's up with your label, but things can act strangely when the surfaces are out of date
cheers Bruce
On Fri, 1 Apr 2011, Ilana Hairston wrote:
Hi there,
I'm having difficulty creating labels in tksurfer (v4.5). I followed the "Creating Labels" instructions on the Wiki, however clicking Fill on the closed path didn't seem to do anything. I used save label anyway, and tried to load this new label again, and even though it says "7681 nonzero vertices found", again i see nothing. Not quite sure what i'm doing wrong.
Also - which LUT file is the correct one to go with aparc.annot? i get the most bizarre labeling with FreeSurferColorLUT Thanks ilana
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
I'm glad to hear it worked out Bruce
On Thu, 14 Apr 2011, Ilana Hairston wrote:
Thanks Bruce, It seems there are some display bugs on the server running freesurfer. In addition to the vanishing label (the label option was on), the scatter plots were messed up. After transferring the data to a different server it seems to be ok. Not sure what the issue is. ilana
If you can't be kind, be vague ???????????????????????????????????? Sent from my iPhone
On Apr 4, 2011, at 10:23, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Ilana,
it looks fine to me. Is it a left hemisphere label? If so, it looks like superior temporal gyrus. Make sure that label display is turned on in the tksurfer interface (the default may be off). It's one of the buttons on the top right.
cheers Bruce
On Sat, 2 Apr 2011, Ilana Hairston wrote:
sorry for the delay (can't ftp from the server). the file is attached
On 2 April 2011 12:33, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
can you email us the label?
On Sat, 2 Apr 2011, Ilana Hairston wrote:
sorry, i probably should have said that this was on the fsaverage, after
glmfit. basically i wanted to create a VOI and extract a stats table for it.
On 1 April 2011 22:33, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Ilana,
usually a bizarre labeling means the annot is out of date. Try running recon-all with -make all on that subject and see if it needs to recreate anything.
Not sure what's up with your label, but things can act strangely when the surfaces are out of date
cheers Bruce
On Fri, 1 Apr 2011, Ilana Hairston wrote:
Hi there,
> I'm having difficulty creating labels in tksurfer (v4.5). I followed > the > "Creating Labels" instructions on the Wiki, however clicking Fill on the > closed path didn't seem to do anything. I used save label anyway, and > tried > to load this new label again, and even though it says "7681 nonzero > vertices > found", again i see nothing. > Not quite sure what i'm doing wrong. > > Also - which LUT file is the correct one to go with aparc.annot? i get > the > most bizarre labeling with FreeSurferColorLUT > Thanks > ilana > > > > The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
-
Bruce Fischl -
Ilana Hairston