External Email - Use Caution

For base processing, specify each timepoint with -tp <> (not the nii file). recon-all -base <templateid> -tp <tp1id> -tp <tp2id> ... -all

Best,

Yujing

From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Atwater, Emanuel R Sent: Wednesday, July 5, 2023 11:37 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Longitudinal Pipeline Issue

External Email - Use Caution Hello Freesurfer Team

I'm attempting to create the base for the longitudinal scan process, as described in the Longitudinal Tutorial (MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1SXnEII9kJHZ_zbXTO9hUkmp6JtgY45JaIxDizhEfOfcBb6...https://secure-web.cisco.com/1nkZqRPPwsOtKx4RoeA_xG1zIjqnnyVHLQdZ7CBucl4swEGw2yu5tDAEYLYt1W_pGaY29BkceLzhHtS7kbWlwUZECS6votXS9MYmNJY6BSeu-CHKAWSuryY6cfHf5f5K65ak2ZwUbZmSENn2NzTc9L_M2pPEdxXYK89GkM4ixXLHqF9HLCEOjSSwVT4cn-2o86Z4PFrqpzvCiI0HR8OtmQNf8sZOP7uarwotmN3EQ_m9wYGtDv6QkQOhz1Sb9oPHWk9uOne2v2w8cXfPLnF2QcD_Fo4P-ZoU08sLa1r4x3Ub8MzHTYrFTCjNT8c4jwYTm2bbK_9qtkdaMo8bTU7vb-w/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFsTutorial%2FLongitudinalTutorial), but for some reason I am unable successfully complete the base.

FS version: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b Recon-all.log: see attached

V/r, Emanuel Atwater