Hello,
I recently ran a batch file on several subjects, but set a time limit which prevented some of them from finishing all the steps of recon-all. In the recon-all-status.log for some of them, the last line is "WMParc". I was unable to find which option of recon-all would do only this step; should I just rerun them with autorecon3?
Thanks,
-Andy
You only need to use the flag -wmparc. Allison
freesurfer@nmr.mgh.harvard.edu