You can use a PARCSFILE. Run aparcstats2table with --help to get more info

On 9/14/19 3:30 PM, vin rasa wrote:

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Dear Freesurfer experts,

Is there a shortcut to extract mean thickness(ThickAvg) and std (ThickStd) from rh/lh.aparc.stats for let's say 4 structures only.

I found aparcstats2table command, which seems to extract all the segmented regions. https://surfer.nmr.mgh.harvard.edu/fswiki/aparcstats2table

Thanks in advance

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