Dear Freesurfers, Is this the correct command for viewing eccentricity data using tksurfer: tksurfer-sess -a rtopy.self.lh -s sj09 -map eccen
Thanks. Michelle
No, to view the angle: tksurfer-sess -a rtopy.self.lh -s sj09 -map angle
This will bring up an overlay with two time points. The first time point is eccen, the 2nd is polar. These are unmasked angles in radians (I think). For masked use (masked by p<.01)
tksurfer-sess -a rtopy.self.lh -s sj09 -map angle.masked
To see the significance maps use
tksurfer-sess -a rtopy.self.lh -s sj09
Michelle Umali wrote:
Dear Freesurfers, Is this the correct command for viewing eccentricity data using tksurfer: tksurfer-sess -a rtopy.self.lh -s sj09 -map eccen
Thanks. Michelle
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Doug and Freesurfers, How does one look at each time point separately to view the eccen and polar maps?
Thanks. Michelle
Quoting Douglas N Greve greve@nmr.mgh.harvard.edu:
No, to view the angle: tksurfer-sess -a rtopy.self.lh -s sj09 -map angle
This will bring up an overlay with two time points. The first time point is eccen, the 2nd is polar. These are unmasked angles in radians (I think). For masked use (masked by p<.01)
tksurfer-sess -a rtopy.self.lh -s sj09 -map angle.masked
To see the significance maps use
tksurfer-sess -a rtopy.self.lh -s sj09 Michelle Umali wrote:
Dear Freesurfers, Is this the correct command for viewing eccentricity data using tksurfer: tksurfer-sess -a rtopy.self.lh -s sj09 -map eccen
Thanks. Michelle
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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maps> Douglas N. Greve, Ph.D.
MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
View->Configure->Functional Overlay this will bring up a control window that you can use to change the time point being viewed doug
Michelle Umali wrote:
Hi Doug and Freesurfers, How does one look at each time point separately to view the eccen and polar maps?
Thanks. Michelle
Quoting Douglas N Greve greve@nmr.mgh.harvard.edu:
No, to view the angle: tksurfer-sess -a rtopy.self.lh -s sj09 -map angle
This will bring up an overlay with two time points. The first time point is eccen, the 2nd is polar. These are unmasked angles in radians (I think). For masked use (masked by p<.01)
tksurfer-sess -a rtopy.self.lh -s sj09 -map angle.masked
To see the significance maps use
tksurfer-sess -a rtopy.self.lh -s sj09 Michelle Umali wrote:
Dear Freesurfers, Is this the correct command for viewing eccentricity data using tksurfer: tksurfer-sess -a rtopy.self.lh -s sj09 -map eccen
Thanks. Michelle
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
maps> Douglas N. Greve, Ph.D.
MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu