Hi,

I have faced a problem using ROI-based, fcseed-config and fcseed-sess

I used either:

fcseed-config -roi /cluster/tootell/pitcairn/1/shahin/good_subjects_anat/atou_anat/label/rh.V1.label -fcname mean.R_V1.dat -fsd bold -mean -cfg mean.R_V1.config

OR:

fcseed-config -roi /cluster/tootell/pitcairn/1/shahin/good_subjects_anat/fsaverage/label/rh.V1.label -fcname mean.R_V1.dat -fsd bold -mean -cfg mean.R_V1.config

to generated the mean.R_V1.config file for right V1 area (ROI for V1 is generated automatically and I have not changed it). Then I use below command to generate mean.R_V1.dat for the session of interest (e.g. atou)

fcseed-sess -s atou -cfg mean.R_V1.config -make-mask

but I just get a "if: Expression Syntax." message and the expected dat file is not generated.

Do you have any idea what is wrong? Any help will be highly appreciated.