Hi Sebastien,

I don't think we have an easy recommendation as it depends on your needs. We're hoping to finalize the release in Jan and that will become the new stable. We also hope that any data processed with the current dev version will be automatically reprocessable with the upcoming release, but we can't guarantee that.

I think mri_convert takes a -cm (convert to min dimension) flag or something like that, but I haven't run many highres data sets. Maybe someone who has can give you pointers?

Bruce

On Wed, 7 Dec 2005, Sebastian Moeller wrote:

Hi All,

which version of freesurfer is the one recommended to be used, the v2.2 stable from November 20. or still the development version from October 3rd? I guess it is still the dev version. My second question is about the conform step implicit to recon-all -motioncor, as I used a 0.5mm^3 resolution for scanning my monkey brains, it would be a pitty to conform this data to 1mm^3 for further steps. So far the only way I know, how to avoid this is using the -iis -ijs -iks switches to mri_convert to actively lie to freesurfer, that the scans already conform to 1mm^3. Is there a nicer way to achieve the use of non-conformed resolution, like doing the -motioncor step of recon-all -autorecon1 manually? Or is the use of the standard process not recommended for monkey data anyway?

Regards Sebastian