Hi, I have been given data that I need to put in a specific format so that it's useable to me. I know how to use mri_convert to convert between analyze and nifti. However, I need one file per run, whereas this data comes such that every frame is a separate analyze file. How do I combine them? Thanks!
Try
mri_concat *.img --o f.nii
doug
Rita Loiotile wrote:
Hi, I have been given data that I need to put in a specific format so that it's useable to me. I know how to use mri_convert to convert between analyze and nifti. However, I need one file per run, whereas this data comes such that every frame is a separate analyze file. How do I combine them? Thanks! _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
I get the message "ReadAnalyzeHeader: unsupported data type 132."
On 12/2/10, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
Try
mri_concat *.img --o f.nii
doug
Rita Loiotile wrote:
Hi, I have been given data that I need to put in a specific format so that it's useable to me. I know how to use mri_convert to convert between analyze and nifti. However, I need one file per run, whereas this data comes such that every frame is a separate analyze file. How do I combine them? Thanks! _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
I don't know what a 132 data is. Is this complex data? In any event, it looks like we don't read it. You can try the FSL tools.
doug
Rita Loiotile wrote:
I get the message "ReadAnalyzeHeader: unsupported data type 132."
On 12/2/10, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
Try
mri_concat *.img --o f.nii
doug
Rita Loiotile wrote:
Hi, I have been given data that I need to put in a specific format so that it's useable to me. I know how to use mri_convert to convert between analyze and nifti. However, I need one file per run, whereas this data comes such that every frame is a separate analyze file. How do I combine them? Thanks! _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Is mri_concat also my best option for converting a series of dicoms to one nifti? The command seems to be taking an inordinately large amount of time to complete...
On 12/3/10, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
I don't know what a 132 data is. Is this complex data? In any event, it looks like we don't read it. You can try the FSL tools.
doug
Rita Loiotile wrote:
I get the message "ReadAnalyzeHeader: unsupported data type 132."
On 12/2/10, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
Try
mri_concat *.img --o f.nii
doug
Rita Loiotile wrote:
Hi, I have been given data that I need to put in a specific format so that it's useable to me. I know how to use mri_convert to convert between analyze and nifti. However, I need one file per run, whereas this data comes such that every frame is a separate analyze file. How do I combine them? Thanks! _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
freesurfer@nmr.mgh.harvard.edu
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Douglas N Greve -
Rita Loiotile