External Email - Use Caution
Depending upon the state of a machine, there is no guarantee a list of "required" packages will encompass everything that needs to be installed/updated, or that a manual install will work. So we neither recommend or support manual/piecemal installs, e.g., via the list below, instead of using the built-in linux package management tools.
- R.
On Dec 29, 2023, at 22:32, Kiyotaka Nemoto <kiyotaka@nemotos.net> wrote: External Email - Use Caution Dear Akira,I agree with R that installing FreeSurfer using the deb is preferred, but if you want to stick to tar.gz,below is the list of the packages to be installed when you install FreeSurfer using the deb package.So if you install these packages, you would be able to run freeview.Hope this helps,Kiyotakasudo apt install -y language-pack-en binutils libx11-dev gettext x11-apps perl make csh tcsh bash file bc gzip tar xorg xorg-dev xserver-xorg-video-intel libncurses5 libbsd0 libc6 libc6 libcom-err2 libcrypt1 libdrm2 libegl1 libexpat1 libffi7 libfontconfig1 libfreetype6 libgcc-s1 libgl1 libglib2.0-0 libglu1-mesa libglvnd0 libglx0 libgomp1 libgssapi-krb5-2 libice6 libjpeg62 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libpcre3 libpng16-16 libquadmath0 libsm6 libstdc++6 libuuid1 libwayland-client0 libwayland-cursor0 libx11-6 libx11-xcb1 libxau6 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxdmcp6 libxext6 libxft2 libxi6 libxkbcommon-x11-0 libxkbcommon0 libxmu6 libxrender1 libxss1 libxt6 zlib1g On Fri, Dec 29, 2023 at 12:14 PM fsbuild <fsbuild@contbay.com> wrote: External Email - Use Caution That message could be the result of missing system libraries which the Ubuntu 22 FS 7.4.1 .deb package will try to automatically identify, download and install for you. You can download the package via the link MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to behttps://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/7.4.1/freesurfer_ubun... the install can be done with,… cd to your Downloads to wherever the .deb file is …$ sudo apt install ./freesurfer_ubuntu22-7.4.1_amd64.debIf the install succeeds, freesurfer will be under /usr/local/freesurfer/7.4.1 which is the path to use for the environment variable FREESURFER_HOME,$ export FREESURFER_HOME=/usr/local/freesurfer/7.4.1If they are not already set in your environment, you should also set,$ export XDG_RUNTIME_DIR=$HOME/.xdg$ export DISPLAY=:0- R.On Dec 27, 2023, at 23:17, Akira Kita <jorrydep9876@gmail.com> wrote: External Email - Use Caution I have installed FreeSurfer 7.4.1 on Ubuntu 22.04 using the binary tar archive freesurfer-linux-ubuntu22_amd64-7.4.1.tar.gz.Freeview fails to launch with the following error message:This application failed to start because no Qt platform plugin could be initialized. Reinstalling the application may fix this problem. Available platform plugins are: eglfs, linuxfb, minimal, minimalegl, offscreen, vnc, wayland-egl, wayland, webgl,How can I solve this? Akira_______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduMailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to behttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer________________... mailing listFreesurfer@nmr.mgh.harvard.eduMailScanner has detected a possible fraud attempt from "secure-web..cisco.com" claiming to behttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer--%C2%A0Kiyotaka Nemoto, M.D., Ph.D.Associate ProfessorDepartment of PsychiatryDivision of Clinical Medicine, Institute of MedicineUniversity of Tsukuba1-1-1 Tennodai Tsukuba, Ibaraki 305-8575, JapanE-mail: kiyotaka@nemotos.net_______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Dear R,
Thank you for the information. The deb package is useful so I agree with you. Only one point is that using deb cannot handle installing two different versions. Do you have any recommendation managing two (or more) different versions using deb package?
Best regards,
Kiyotaka
On Sat, Dec 30, 2023 at 1:21 PM fsbuild fsbuild@contbay.com wrote:
External Email - Use CautionDepending upon the state of a machine, there is no guarantee a list of "required" packages will encompass everything that needs to be installed/updated, or that a manual install will work. So we neither recommend or support manual/piecemal installs, e.g., via the list below, instead of using the built-in linux package management tools.
- R.
On Dec 29, 2023, at 22:32, Kiyotaka Nemoto kiyotaka@nemotos.net wrote:
External Email - Use CautionDear Akira,
I agree with R that installing FreeSurfer using the deb is preferred, but if you want to stick to tar.gz, below is the list of the packages to be installed when you install FreeSurfer using the deb package. So if you install these packages, you would be able to run freeview.
Hope this helps,
Kiyotaka
sudo apt install -y language-pack-en binutils libx11-dev gettext x11-apps \ perl make csh tcsh bash file bc gzip tar \ xorg xorg-dev xserver-xorg-video-intel libncurses5 libbsd0 libc6 libc6 \ libcom-err2 libcrypt1 libdrm2 libegl1 libexpat1 libffi7 libfontconfig1 \ libfreetype6 libgcc-s1 libgl1 libglib2.0-0 libglu1-mesa libglvnd0 libglx0 \ libgomp1 libgssapi-krb5-2 libice6 libjpeg62 libk5crypto3 libkeyutils1 \ libkrb5-3 libkrb5support0 libpcre3 libpng16-16 libquadmath0 libsm6 \ libstdc++6 libuuid1 libwayland-client0 libwayland-cursor0 libx11-6 \ libx11-xcb1 libxau6 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 \ libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 \ libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 \ libxcb-xinput0 libxcb-xkb1 libxcb1 libxdmcp6 libxext6 libxft2 libxi6 \ libxkbcommon-x11-0 libxkbcommon0 libxmu6 libxrender1 libxss1 libxt6 zlib1g
On Fri, Dec 29, 2023 at 12:14 PM fsbuild fsbuild@contbay.com wrote:
External Email - Use CautionThat message could be the result of missing system libraries which the Ubuntu 22 FS 7.4.1 .deb package will try to automatically identify, download and install for you. You can download the package via the link *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1J9_Z0HLKDYWwXrGPXi_fqFTQLygJlwVaU-141E5zzDhAkk... https://secure-web.cisco.com/1_U_QdXreVu6wH-joAQGYWXyzydRY-oOu_HN35KN1_Gu2EugYsBfddLu9kSjKPPIOY85f8qSjXQxvlcdHQbCEYXVWo8anAkh0AdrTtlKCaQwtww17b3P86ROK0bEpuAFeszer1A1_0OHLRUTv_M-z4R-ioKJRfHKPvCW5AMEWOI0Fz18EeZs4-TM2OkaB6BIbQtC-tkRho8ufs5oTdQLGRd5tRFsTg3W9EsFp7A1jq97JFX4N8qxa_rjgULLaBn6vZ_vO2UeqbtQSS8yEfOh13X15865cyTH35_evnYvZCQasPJPE6AdHq2BCC-D-CsYDTDeIQfKtRuffhcyHx5vFdA/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Fpub%2Fdist%2Ffreesurfer%2F7.4.1%2Ffreesurfer_ubuntu22-7.4.1_amd64.deb and the install can be done with,
… cd to your Downloads to wherever the .deb file is …
$ sudo apt install ./freesurfer_ubuntu22-7.4.1_amd64.deb
If the install succeeds, freesurfer will be under /usr/local/freesurfer/7.4.1 which is the path to use for the environment variable FREESURFER_HOME,
$ export FREESURFER_HOME=/usr/local/freesurfer/7.4.1
If they are not already set in your environment, you should also set,
$ export XDG_RUNTIME_DIR=$HOME/.xdg
$ export DISPLAY=:0
- R.
On Dec 27, 2023, at 23:17, Akira Kita jorrydep9876@gmail.com wrote:
External Email - Use CautionI have installed FreeSurfer 7.4.1 on Ubuntu 22.04 using the binary tar archive freesurfer-linux-ubuntu22_amd64-7.4.1.tar.gz.
Freeview fails to launch with the following error message:
This application failed to start because no Qt platform plugin could be initialized. Reinstalling the application may fix this problem. Available platform plugins are: eglfs, linuxfb, minimal, minimalegl, offscreen, vnc, wayland-egl, wayland, webgl,
How can I solve this?
Akira _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1V_JnslOQ1vJ4stqYuv4hRFLUz7dZhLqSV_wd3v0YC26Fln... https://secure-web.cisco.com/1QI73ha0dZUxEGvYoEY_1bYLyCUQHOXV-uF3VAAGaEPKSzyD1nk2DxAarPrXJTqvTusR8gBzTyWOW2-kKzsxSeIadM-y30LBoFcSz5mxwl6BrxdQ6Inv507a1TZr765rV_NZR-bk698jbJ-vqcPvC4EKJ5UTWDndvRP0uBpApG-TtOsQUPPG8ZHqP6nuQ0_aya37i0g22_g_ZxtO8xo3uJ7k-zPCumS_Eh5wFjz0kMaNw8xK2i_tLxfm9uND_vZiF4BA8RBWhfWCKe3bjJxORg6txWtP7nqolZUOmiK8132YcfTy76x54nkehXXP1lKggt5vEVxPG3qW4ilDrAduriw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <Freesurfer@nmr.mgh.harvard..edu> *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1_Y_hq1CDGcN6hCufmh_XaBwvNXWCE2fQWEDynV8-4XJei9... https://secure-web.cisco.com/1QI73ha0dZUxEGvYoEY_1bYLyCUQHOXV-uF3VAAGaEPKSzyD1nk2DxAarPrXJTqvTusR8gBzTyWOW2-kKzsxSeIadM-y30LBoFcSz5mxwl6BrxdQ6Inv507a1TZr765rV_NZR-bk698jbJ-vqcPvC4EKJ5UTWDndvRP0uBpApG-TtOsQUPPG8ZHqP6nuQ0_aya37i0g22_g_ZxtO8xo3uJ7k-zPCumS_Eh5wFjz0kMaNw8xK2i_tLxfm9uND_vZiF4BA8RBWhfWCKe3bjJxORg6txWtP7nqolZUOmiK8132YcfTy76x54nkehXXP1lKggt5vEVxPG3qW4ilDrAduriw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
-- Kiyotaka Nemoto, M.D., Ph.D. Associate Professor Department of Psychiatry Division of Clinical Medicine, Institute of Medicine University of Tsukuba 1-1-1 Tennodai Tsukuba, Ibaraki 305-8575, Japan E-mail: kiyotaka@nemotos.net _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <Freesurfer@nmr..mgh.harvard.edu> *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1V_JnslOQ1vJ4stqYuv4hRFLUz7dZhLqSV_wd3v0YC26Fln... https://secure-web.cisco.com/10yQktVCUjWLcX4EnUarLK9yyInP-qwPbHkUVrTZrFycxGyPVVNCS6AWceA4VrXaqDZKNKgT8IWIqxcI0mDQuwYlQezYTxAnnONO71KZ09FcHlwebj6YV0IDI5xoA5p78gksfhNm09jo1dvgFYl1FvieWayGcWE22K2ERcg8bpu1w6FtLf6vCfZDTIidn8kB3nXHRUjZ9zMeCJhe4qU2-FRuOjQTrx_wM1kUwjkciM7ayEqWB7S7ZAhruRV-KxIIWDSWimEi8yd4CTQgUXqTWvY3y4WIRLQmyeJBIty_V8dH4Hs-U2PmdjIv1c00zo8h47KHdfo-wP2R20PXHcKtkmg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
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freesurfer@nmr.mgh.harvard.edu
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fsbuild -
Kiyotaka Nemoto