Thank you for your quick answer.
Chris - it's "/stats/" in the address.
Doug - Thanks, mris_anatomical_stats works. For this it was also necessary to copy the .label file in each subjects - "/label/" directory
Alex
--- En date de : Jeu 24.2.11, Chris Hyatt Chyatt@harthosp.org a écrit :
De: Chris Hyatt Chyatt@harthosp.org Objet: Re: [Freesurfer] aparcstats2table error À: "FS Mailing List" Freesurfer@nmr.mgh.harvard.edu, "Alex Hanganu" hanganu.alexandru@yahoo.de Date: Jeudi 24 février 2011, 18h48
You have /stat/ rather than /stats/ in the address. Have you checked that?
Alex Hanganu hanganu.alexandru@yahoo.de 2/24/2011 12:22 PM >>>
Dear Chris, Doug,
We created a ROI in qdec (EXMPL.label) and tried to measure it's thickness.
The cmd used: aparcstats2table --hemi ?h --subjects 1 2 3 --parc .../DIR/EXMPL.label --meas thickness --t ROI.txt
ERROR: cannot find .../freesurfer/subjects/SUBJECT_NAME/stat/EXMPL.label.statsqdec/DIR
Can you please tell us what might be the problem ?
Sincerely, Alex.
You probably don't want to just copy it. You probably need to transform it from what ever space it's in to the individual anat space. Use mri_surf2surf.
doug
Alex Hanganu wrote:
Thank you for your quick answer.
Chris - it's "/stats/" in the address.
Doug - Thanks, mris_anatomical_stats works. For this it was also necessary to copy the .label file in each subjects - "/label/" directory
Alex
--- En date de : *Jeu 24.2.11, Chris Hyatt /Chyatt@harthosp.org/* a écrit :
De: Chris Hyatt <Chyatt@harthosp.org> Objet: Re: [Freesurfer] aparcstats2table error À: "FS Mailing List" <Freesurfer@nmr.mgh.harvard.edu>, "Alex Hanganu" <hanganu.alexandru@yahoo.de> Date: Jeudi 24 février 2011, 18h48 You have /stat/ rather than /stats/ in the address. Have you checked that? >>> Alex Hanganu <hanganu.alexandru@yahoo.de> 2/24/2011 12:22 PM >>> Dear Chris, Doug, We created a ROI in qdec (EXMPL.label) and tried to measure it's thickness. The cmd used: aparcstats2table --hemi ?h --subjects 1 2 3 --parc .../DIR/EXMPL.label --meas thickness --t ROI.txt ERROR: cannot find .../freesurfer/subjects/SUBJECT_NAME/stat/EXMPL.label.statsqdec/DIR Can you please tell us what might be the problem ? Sincerely, Alex.
freesurfer@nmr.mgh.harvard.edu