Hello Everyone,
Greetings.
I am learning freesurfer tricks. I am stuck and have a question.
I have run 10 subjects through freesurfer. I have made custom volume regions for arcuate fasciculus for 10 subjects. Now I want to get some measurements inside this region.
How do I get the volume of the region ?
How do I get the mean T1 intensity in this region ?
Can somebody share some script or point me to some script ?
Will be very thankful.
Subha
Hi Subha, use mri_segstats, something like
mri_segstats --i norm.mgz -seg arcfas.mgz -id 1 -sum arcfas.summary.dat Look at the --help for more info doug
On 05/30/2013 07:04 AM, Subhabrata Chaudhury wrote:
Hello Everyone, Greetings. I am learning freesurfer tricks. I am stuck and have a question. I have run 10 subjects through freesurfer. I have made custom volume regions for arcuate fasciculus for 10 subjects. Now I want to get some measurements inside this region. How do I get the volume of the region ? How do I get the mean T1 intensity in this region ? Can somebody share some script or point me to some script ? Will be very thankful. Subha
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freesurfer@nmr.mgh.harvard.edu
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Douglas N Greve -
Subhabrata Chaudhury