The current fsfast tutorial does not work with the new version. I'm preparing a new tutorial. Sorry about that.

doug

Fernanda Palhano wrote:

Hi,

I am trying to run the FsFast tutorial, but I am getting the following error:

Fernanda-Palhanos-Mac-Pro:fsfast/fsfast-tutorial/fb1-analysis-study] fernandapalhano% tkmedit-sess -s mgh-101.1 -a sm-gamma-fwhm5 -c odd-v-0 -aparc+aseg tmp: Subscript out of range. tmp: Subscript out of range. tmp: Subscript out of range. tmp: Subscript out of range. ERROR: cannot find /Users/fernandapalhano/Data/fsfast/fsfast-tutorial/fb1-analysis-study/mgh-101.1/bold/register.dof6.dat [Fernanda-Palhanos-Mac-Pro:fsfast/fsfast-tutorial/fb1-analysis-study] fernandapalhano% tksurfer-sess -s mgh-101.1 -a sm-gamma-fwhm5 -c odd-v-0 -hemi lh -aparc tmp: Subscript out of range. tmp: Subscript out of range. tmp: Subscript out of range. tmp: Subscript out of range. $Id: tksurfer-sess,v 1.15.2.1 2010/07/14 16:08:04 greve Exp $ Darwin Fernanda-Palhanos-Mac-Pro.local 10.4.0 Darwin Kernel Version 10.4.0: Fri Apr 23 18:28:53 PDT 2010; root:xnu-1504.7.4~1/RELEASE_I386 i386 Mon Jan 10 15:08:15 BRT 2011 /Applications/freesurfer/bin/tksurfer

list odd-v-0 con/map odd-v-0 /Users/fernandapalhano/Data/fsfast/fsfast-tutorial/fb1-analysis-study/mgh-101.1/bold/sm-gamma-fwhm5/odd-v-0/sig.nii maplist /Users/fernandapalhano/Data/fsfast/fsfast-tutorial/fb1-analysis-study/mgh-101.1/bold/sm-gamma-fwhm5/odd-v-0/sig.nii mri_concat /Users/fernandapalhano/Data/fsfast/fsfast-tutorial/fb1-analysis-study/mgh-101.1/bold/sm-gamma-fwhm5/odd-v-0/sig.nii --o /Users/fernandapalhano/Data/fsfast/fsfast-tutorial/fb1-analysis-study/mgh-101.1/bold/sm-gamma-fwhm5/tksconcat.nii ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to /Users/fernandapalhano/Data/fsfast/fsfast-tutorial/fb1-analysis-study/mgh-101.1/bold/sm-gamma-fwhm5/tksconcat.nii ERROR: cannot find /Users/fernandapalhano/Data/fsfast/fsfast-tutorial/fb1-analysis-study/mgh-101.1/bold/register.dof6.dat

I checked all the mgh files in fb1-analysis-study and any of them have register.dof6.dat, there is only register.dat. Where can I obtain these file?

Thanks in advance, Fernanda Palhano

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