Freesurfer, We have scans that have recon-all completed. Following recon-all, we completed watershed (under the MNE toolbox) to extract skull and scalp from the T1 scans. The outputs of this algorithm are outer brain, inner skull, outer skull and outer scalp surfaces. We are particularly interested in these volumes for our study. Is there a way to convert these surface to volumes representative of CSF (layer between brain/skull), skull (inner to outer skull surface) and skin (outer skull to outer scalp)?
Matthew Sherwood Medical Research Engineer
Wright State Research Institute 4035 Colonel Glenn Hwy. Dayton, OH 45431
PH: 937.705.1025 FAX: 937.705.1095 EMAIL: matt.sherwood@wright.edumailto:matt.sherwood@wright.edu
Hi Matt
you might want to email Matti about this. I think that you can, but he might know the details
cheers Bruce On Tue, 26 Aug 2014, Sherwood, Matt wrote:
Freesurfer,
We have scans that have recon-all completed. Following recon-all, we completed watershed (under the MNE toolbox) to extract skull and scalp from the T1 scans. The outputs of this algorithm are outer brain, inner skull, outer skull and outer scalp surfaces. We are particularly interested in these volumes for our study. Is there a way to convert these surface to volumes representative of CSF (layer between brain/skull), skull (inner to outer skull surface) and skin (outer skull to outer scalp)?
Matthew Sherwood Medical Research Engineer
Wright State Research Institute 4035 Colonel Glenn Hwy.
Dayton, OH 45431
PH: 937.705.1025
FAX: 937.705.1095
EMAIL: matt.sherwood@wright.edu
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Sherwood, Matt