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From: "Maedeh Khalilian" M.Khalilian@sutech.ac.ir To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Date: Thu, 09 May 2019 01:24:58 +0430 Subject: Visualizing Volumetric Files on Surface
Dear FreeSurfer experts; I have created some volumetric(.nii) files in FreeSurfer (the procedure is as following: lh/rh.aparc.annot> mri_divide_parcellation > mri_aparc2aseg > deleting subcortical and white matter regions in order to keep just cortical regions on GM).
Now I wanna visualize my volumetric files on surface so that I myself can determine the color of each region. But I dunno how to do it exactly. I would be grateful if u could help me with that. Thanks in advance Best regards Maedeh,
Hi Maedeh,
I'm not quite clear about what exactly you want to do but have you tried loading the volume as an overlay to the surface in freeview?
Best, Ruopeng
On 5/9/19 12:47 PM, Maedeh Khalilian wrote:
External Email - Use CautionFrom: "Maedeh Khalilian" M.Khalilian@sutech.ac.ir To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Date: Thu, 09 May 2019 01:24:58 +0430 Subject: Visualizing Volumetric Files on Surface Dear FreeSurfer experts; I have created some volumetric(.nii) files in FreeSurfer (the procedure is as following: lh/rh.aparc.annot> mri_divide_parcellation > mri_aparc2aseg > deleting subcortical and white matter regions in order to keep just cortical regions on GM).
Now I wanna visualize my volumetric files on surface so that I myself can determine the color of each region. But I dunno how to do it exactly. I would be grateful if u could help me with that. Thanks in advance Best regards Maedeh,
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Maedeh Khalilian -
Ruopeng Wang