We are trying to compute a pial_lgi surface for an average brain.
When we run mris_compute_lgi, we get this error at the mris_fill stage:
conforming output volume setting resolution for intermediate calculations to 1.0000 reading surface from lh.pial... reading group avg surface area 1015 cm^2 from file Reading in average area lh.pial.avg.area.mgh MatrixMultiply: m1 is null!
Please can you suggest what we need to do to make this work?
Thanks a lot,
Holly Bridge
Dr Holly Bridge
Royal Society University Research Fellow FMRIB Centre Tel: +44-1865-222582 John Radcliffe Hospital Headington Oxford OX3 9DU Email: hb@fmrib.ox.ac.uk
Lecturer and JRF, New College
Hi Holly,
Can you please try to launch it on the fsaverage subject that you have downloaded with the distribution? Just to see if you get the same error, because I don't seem to get an error neither with fsaverage nor with the average subject I just created.
Marie
On 20 août 09, at 15:50, Holly Bridge wrote:
We are trying to compute a pial_lgi surface for an average brain.
When we run mris_compute_lgi, we get this error at the mris_fill stage:
conforming output volume setting resolution for intermediate calculations to 1.0000 reading surface from lh.pial... reading group avg surface area 1015 cm^2 from file Reading in average area lh.pial.avg.area.mgh MatrixMultiply: m1 is null!
Please can you suggest what we need to do to make this work?
Thanks a lot,
Holly Bridge
Dr Holly Bridge
Royal Society University Research Fellow FMRIB Centre Tel: +44-1865-222582 John Radcliffe Hospital Headington Oxford OX3 9DU Email: hb@fmrib.ox.ac.uk
Lecturer and JRF, New College
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