Hello,

Individuals who downloaded Freesurfer v5.3 for snow leopard (32bit) will be missing six fsl routines. A patch has been created and can be downloaded from this link:

ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/patches/freesurfer_fsl.tar.gz

To apply the patch, simply extract the contents of the above file into the "/Applications/freesurfer/bin" directory. This should result in six new files in the "/Applications/freesurfer/bin" directory all with the .fsl extension.

-Zeke

On 07/17/2013 09:33 AM, Gundran, Andrew wrote:

Hello freesurfers,

I’ve been trying to run tracula on freesurfer and it seems that when I get to the point where it uses FSL’s flirt I receive an error. I looked into it further and it seems I am missing a file to run flirt:

$FREESURFER_HOME/bin/flirt.fsl

It seems that I somehow do not have that file to complete tracula. I was hoping someone could help with this or perhaps send me the file?

I am using freesurfer- Darwin-snowleopard-i686-stable-pub-v5.3.0- MacBook-Pro.local 10.8.0 Darwin Kernel Version 10.8.0:

Hope to hear from someone soon, Andrew _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer