Hi Batool - Please send over your (actual and not made up :) config file and trac-all.log.

a.y

________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Rizvi, Batool [br2499@cumc.columbia.edu] Sent: Tuesday, October 10, 2017 4:43 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] TRACULA - error

Hi, I’m running tracula using the following command: (Note: I’m replacing actual paths with made up paths)

trac-all -prep -c /path/to/my/config.sh

And for some reason it stops running while working on the first subject (creates the folder for the first subject), with this error:

if: Expression Syntax.

It doesn’t show any errors before this line. The line before this one was copying over the bvecs file to the new path (cp /path/to/my/bvecs.txt path/to/dmri/dwi_orig.bvecs)

Is there something I’m doing wrong?

Thanks, Batool