Hi emad, I think if you change format type of images to nifti it will work as allright. I had a problem like this and it worked for me... On Dec 24, 2015 8:30 PM, freesurfer-request@nmr.mgh.harvard.edu wrote:

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Today's Topics:

1. Recon-all error (Emad Ahmadi)

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Message: 1 Date: Thu, 24 Dec 2015 09:50:52 -0500 From: Emad Ahmadi emad@nmr.mgh.harvard.edu Subject: [Freesurfer] Recon-all error To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Message-ID: B3495F09-E1E9-4057-B839-C407B2182364@nmr.mgh.harvard.edu Content-Type: text/plain; charset="utf-8"

Hi,

I ran recon-all on the dicoms of a subject, obtained at Bay 4, and I received the following error:

mris_calc -o lh.area.mid lh.area add lh.area.pial dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ___emutls_get_address Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib

Trace/BPT trap Wed Dec 23 21:59:54 EST 2015 ERROR: vertexvol mris_calc -o lh.area.mid lh.area add lh.area.pial Darwin MGH000844.local 15.2.0 Darwin Kernel Version 15.2.0: Fri Nov 13 19:56:56 PST 2015; root:xnu-3248.20.55~2/RELEASE_X86_64 x86_64

recon-all -s 3Lt_002 exited with ERRORS at Wed Dec 23 21:59:54 EST 2015

For more details, see the log file /Users/Emad/Projects/3LT/subjDir/3Lt_002/scripts/recon-all.log To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting

I have attached the log file. I?d truly appreciate your help.

Thank you, and with best wishes for a wonderful holiday season for everyone, Emad

Emad Ahmadi, MD

Research Fellow in Radiology Massachusetts General Hospital Harvard Medical School

25 New Chardon Street, Suite 400 Boston, MA 02114 Tel: 617 726 5237 Email: emad@nmr.mgh.harvard.edu