Can you send the terminal output?

On 5/20/19 8:51 AM, Michal Tanzer wrote:

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Dear Freesurfer experts, I am having some difficulties in creating annot file for specific ROIs using the 2009atlas. When I am using this command, it saves the annot but I am getting empty files. Using the same command with the aparc.annot file and different ROIs seems fine, so I am not sure what is the problem.

mris_label2annot --s fsaverage --h lh --ctab label/aparc.annot.a2009s.ctab --a myaprac--l dir/lh.G_insular_short.label --l dir/lh.G_Ins_lg&S_cent_ins.label --debug

Thank you for your help,

Kind regards, Michal -- Michal Tanzer, PhD

Postdoctoral fellow; Clinical Psychologist. Research Department of Clinical, Educational and Health Psychology, University College London, United Kingdom

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