External Email - Use Caution

I reran after adding ">> log", it went through... It's strange that it won't run without >>log.... Thank you. -Seonjoo

On 6/9/18, 10:15 PM, "freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Bruce Fischl" <freesurfer-bounces@nmr.mgh.harvard.edu on behalf of fischl@nmr.mgh.harvard.edu> wrote:

hmmm, I don't. Does your disk have space on it? Can you try rerunning the last command in the recon-all.cmd file and see if it completes?

Bruce On Sun, 10 Jun 2018, Lee, Seonjoo wrote:

> > External Email - Use Caution > > Hi Bruce, > > recon-all did not run, and I could not figure out the problem. Do you have any clue what could be? > The log file does not tell anything… > > The command was the most simplest one (using only t1). > > If you need more information to figure out the cause of this error, please let me know. > > Thank you. > > -Seonjoo > > > > ==== > > #@# MotionCor Sat Jun 9 21:04:46 EDT 2018 > > Found 1 runs > > subject/mri/orig/001.mgz > > Checking for (invalid) multi-frame inputs... > > WARNING: only one run found. This is OK, but motion > > correction cannot be performed on one run, so I'll > > copy the run to rawavg and continue. > > \n cp subject/mri/orig/001.mgz subject/mri/rawavg.mgz \n > > subject > > \n mri_convert subject/mri/rawavg.mgz subject/mri/orig.mgz --conform \n > > mri_convert.bin subject/mri/rawavg.mgz subject/mri/orig.mgz --conform > > $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ > > reading from subject/mri/rawavg.mgz... > > TR=6.81, TE=3.16, TI=0.00, flip angle=9.00 > > i_ras = (-0, -1, 0) > > j_ras = (-0, -0, -1) > > k_ras = (1, -0, 0) > > changing data type from short to uchar (noscale = 0)... > > MRIchangeType: Building histogram > > Reslicing using trilinear interpolation > > writing to subject/mri/orig.mgz... > > Darwin Seonjoos-iMac.local 17.5.0 Darwin Kernel Version 17.5.0: Mon Mar 5 22:24:32 PST 2018; > root:xnu-4570.51.1~1/RELEASE_X86_64 x86_64 > > > > recon-all -s subid exited with ERRORS at Sat Jun 9 21:04:51 EDT 2018 > > >