Dear Aimee, Can you please share your FreeSurfer version, command line, and a screenshot illustrating the problem, please? Best wishes, /Eugenio

-- Juan Eugenio Iglesias http://www.jeiglesias.com

From: Aimee Flores flores@cbs.mpg.de Date: Thursday, September 10, 2026 at 3:42 AM To: freesurfer freesurfer@nmr.mgh.harvard.edu Cc: Felicia Wolf wolffe@cbs.mpg.de; Nastya Asmolova asmolova@cbs.mpg.de Subject: [Freesurfer] lack of cerebellum in freesurfer clinical

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Dear freesurfer team,

I am running the freesurfer clinical and we found that it does not extract the cerebellum by design. However, for coregistering the t1 to other imaging modalities it would be important to have a whole brain mask. I wonder if there is any solution for this.

Best wishes, Aimee Flores

-- PhD candidate at Charité – Universitätsmedizin Berlin Neurology Department. Max Planck Institute for Human Cognitive and Brain Sciences. Stephanstrasse 1a, 04103 Leipzig, Germany. Tel: +49(0)3419940-2256 Neurotech Stroke project Instagram: https://secure-web.cisco.com/19oI9BK5igUPkhRSoXPEfneexkjWlRWfv0N0paLp_Caws-g... X: https://secure-web.cisco.com/1ZGkNThsM86iaEcfI1-ga8G_72WN0Ve518MR_ojtBII6jhJ... LinkedIn: http://secure-web.cisco.com/1TjxqTx_gQ9JRdOa14ckrvdeMhX5xdy2MqNOBlVgvzH_kgpa... YouTube: https://secure-web.cisco.com/1d6ZS7_sRE3xPAYpp6ozaS6svy1FpF4rRnneu_CBmfoJxpn... Website: https://secure-web.cisco.com/1g_n3ZldRmGbDnDtQUnSDsiQtXnPhjges8BccTPyFMKRugR... _______________________________________________ Freesurfer mailing list -- freesurfer@nmr.mgh.harvard.edu To unsubscribe send an email to freesurfer-leave@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman3/lists/freesurfer@nmr.mgh.harvard.e...