Hey Everyone, I searched through the archives and it seems to be that there is an intent to release FreeSurfer as open source eventually. However, the most recent post about that that I could find was from a year or two ago. Is there any update on this or plan for when this will happen? The reason why I ask is that we're looking to run FreeSurfer on Debian based systems, and it doesn't seem that you provide packages for those systems. I would be happy to compile and package this software and make it available to the community if the source was available, or made available. Thank you for your time. I look forward to hearing back from you.
---Alex
Hi Alex,
you're welcome to a source distribution now. Nick can get you one.
cheers Bruce On Tue, 6 Jul 2010, Alex Waite wrote:
Hey Everyone, I searched through the archives and it seems to be that there is an intent to release FreeSurfer as open source eventually. However, the most recent post about that that I could find was from a year or two ago. Is there any update on this or plan for when this will happen? The reason why I ask is that we're looking to run FreeSurfer on Debian based systems, and it doesn't seem that you provide packages for those systems. I would be happy to compile and package this software and make it available to the community if the source was available, or made available. Thank you for your time. I look forward to hearing back from you.
---Alex
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Excellent! This is all very good news. Is it Nick Schmansky I should be contacting? If so, I'll shoot him an email. Thanks for the quick response.
---Alex
On 07/06/2010 01:06 PM, Bruce Fischl wrote:
Hi Alex,
you're welcome to a source distribution now. Nick can get you one.
cheers Bruce On Tue, 6 Jul 2010, Alex Waite wrote:
Hey Everyone, I searched through the archives and it seems to be that there is an intent to release FreeSurfer as open source eventually. However, the most recent post about that that I could find was from a year or two ago. Is there any update on this or plan for when this will happen? The reason why I ask is that we're looking to run FreeSurfer on Debian based systems, and it doesn't seem that you provide packages for those systems. I would be happy to compile and package this software and make it available to the community if the source was available, or made available. Thank you for your time. I look forward to hearing back from you.
---Alex
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Hi,
On Tue, Jul 06, 2010 at 02:06:36PM -0400, Bruce Fischl wrote:
Hi Alex,
you're welcome to a source distribution now. Nick can get you one.
That sounds great -- what license will it be under?
Thanks in advance,
Michael
the source is still not truly open source yet, its available under the existing terms (non-commercial, non-clinical, academic-only). our intention is to create a BSD-style open source release.
n.
On Tue, 2010-07-06 at 14:22 -0400, Michael Hanke wrote:
Hi,
On Tue, Jul 06, 2010 at 02:06:36PM -0400, Bruce Fischl wrote:
Hi Alex,
you're welcome to a source distribution now. Nick can get you one.
That sounds great -- what license will it be under?
Thanks in advance,
Michael
Nick,
the 5.0 will be non-clinical? ---------------------------------------------------------- Pedro Paulo de M. Oliveira Junior Diretor de Operações Netfilter & SpeedComm Telecom -- For mobile: http://www.netfilter.com.br/mobile
On Tue, Jul 6, 2010 at 16:05, Nick Schmansky nicks@nmr.mgh.harvard.eduwrote:
the source is still not truly open source yet, its available under the existing terms (non-commercial, non-clinical, academic-only). our intention is to create a BSD-style open source release.
n.
On Tue, 2010-07-06 at 14:22 -0400, Michael Hanke wrote:
Hi,
On Tue, Jul 06, 2010 at 02:06:36PM -0400, Bruce Fischl wrote:
Hi Alex,
you're welcome to a source distribution now. Nick can get you one.
That sounds great -- what license will it be under?
Thanks in advance,
Michael
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Hi PPJ,
yes, that's currently out of our control (due to CorTechs licensing constraints). BSD would be nice some day, but not something we can do at the moment.
cheers Bruce
On Tue, 6 Jul 2010, Pedro Paulo de Magalhães Oliveira Junior wrote:
Nick,
the 5.0 will be non-clinical?
Pedro Paulo de M. Oliveira Junior Diretor de Operações Netfilter & SpeedComm Telecom -- For mobile: http://www.netfilter.com.br/mobile
On Tue, Jul 6, 2010 at 16:05, Nick Schmansky nicks@nmr.mgh.harvard.eduwrote:
the source is still not truly open source yet, its available under the existing terms (non-commercial, non-clinical, academic-only). our intention is to create a BSD-style open source release.
n.
On Tue, 2010-07-06 at 14:22 -0400, Michael Hanke wrote:
Hi,
On Tue, Jul 06, 2010 at 02:06:36PM -0400, Bruce Fischl wrote:
Hi Alex,
you're welcome to a source distribution now. Nick can get you one.
That sounds great -- what license will it be under?
Thanks in advance,
Michael
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Hi Alex
I'm running fs on debian boxes here and they run the freesurfer-Linux-centos4-stable-pub-vX.X.X version, without any need to recompile sources
cheers
Hey Everyone, I searched through the archives and it seems to be that there is an intent to release FreeSurfer as open source eventually. However, the most recent post about that that I could find was from a year or two ago. Is there any update on this or plan for when this will happen? The reason why I ask is that we're looking to run FreeSurfer on Debian based systems, and it doesn't seem that you provide packages for those systems. I would be happy to compile and package this software and make it available to the community if the source was available, or made available. Thank you for your time. I look forward to hearing back from you.
---Alex
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Dear Christophe and team
I am writing up something on frontal measures derived from 2009 Destrieux atlas I need to know the anatomical boundaries for frontomarginal, orbital H shaped sulcus, and the three inferior, middle and superior gyrus and sulcus: is there a place where I can find these descriptions? Cheers Lena
On 06/07/2010 23:11, "Christophe Destrieux" christophe.destrieux@univ-tours.fr wrote:
Hi Alex
I'm running fs on debian boxes here and they run the freesurfer-Linux-centos4-stable-pub-vX.X.X version, without any need to recompile sources
cheers
Hey Everyone, I searched through the archives and it seems to be that there is an intent to release FreeSurfer as open source eventually. However, the most recent post about that that I could find was from a year or two ago. Is there any update on this or plan for when this will happen? The reason why I ask is that we're looking to run FreeSurfer on Debian based systems, and it doesn't seem that you provide packages for those systems. I would be happy to compile and package this software and make it available to the community if the source was available, or made available. Thank you for your time. I look forward to hearing back from you.
---Alex
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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is
addressed. If you believe this e-mail was sent to you in error and the
contains patient information, please contact the Partners Compliance
HelpLine at
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properly
dispose of the e-mail.
-- Christophe Destrieux,
Directeur du Département Communication et Multimedia http://med.univ-tours.fr/M0S01/0/fiche___defaultstructureksup/=1200651159612 http://med.univ-tours.fr/M0S01/0/fiche___defaultstructureksup/&RH=12006511596 12 http://med.univ-tours.fr/M0S01/0/fiche___defaultstructureksup/&RH=1200651 159612
Laboratoire d'Anatomie - Faculté de Médecine - 10 Bd Tonnellé 37032 Tours - France tel (33) 2 47 36 61 36 - fax (33) 2 47 36 62 07
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Lena Palaniyappan Clinical Lecturer & Honorary StR | Division of Psychiatry ( University of Nottingham) South Block 'A' floor| Queens Medical Centre | Nottingham | NG7 2UH
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It is my understanding that these are defined based on the Duvernoy atlas. If this is not the case, please let me know.
Lena Palaniyappan wrote:
Dear Christophe and team
I am writing up something on frontal measures derived from 2009 Destrieux atlas – I need to know the anatomical boundaries for frontomarginal, orbital H shaped sulcus, and the three inferior, middle and superior gyrus and sulcus: is there a place where I can find these descriptions? Cheers Lena
On 06/07/2010 23:11, "Christophe Destrieux" christophe.destrieux@univ-tours.fr wrote:
Hi Alex I'm running fs on debian boxes here and they run the freesurfer-Linux-centos4-stable-pub-vX.X.X version, without any need to recompile sources cheers > Hey Everyone, > I searched through the archives and it seems to be that there is an > intent to release FreeSurfer as open source eventually. However, the > most recent post about that that I could find was from a year or two > ago. Is there any update on this or plan for when this will happen? > The reason why I ask is that we're looking to run FreeSurfer on > Debian based systems, and it doesn't seem that you provide packages for > those systems. I would be happy to compile and package this software > and make it available to the community if the source was available, or > made available. > Thank you for your time. I look forward to hearing back from you. > > ---Alex > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and properly > dispose of the e-mail. > > -- Christophe Destrieux, Directeur du Département Communication et Multimedia http://med.univ-tours.fr/M0S01/0/fiche___defaultstructureksup/=1200651159612 <http://med.univ-tours.fr/M0S01/0/fiche___defaultstructureksup/&RH=1200651159612> <http://med.univ-tours.fr/M0S01/0/fiche___defaultstructureksup/&RH=1200651159612> Laboratoire d'Anatomie - Faculté de Médecine - 10 Bd Tonnellé 37032 Tours - France tel (33) 2 47 36 61 36 - fax (33) 2 47 36 62 07 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
*Lena Palaniyappan *Clinical Lecturer & Honorary StR | Division of Psychiatry ( University of Nottingham) South Block 'A' floor| Queens Medical Centre | Nottingham | NG7 2UH
This message has been checked for viruses but the contents of an attachment may still contain software viruses which could damage your computer system: you are advised to perform your own checks. Email communications with the University of Nottingham may be monitored as permitted by UK legislation.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Hi Antony and Lena
they are mainly based on Duvernoy. We just published a paper describing the borders of each parcellation :
Neuroimage. <javascript:AL_get(this, 'jour', 'Neuroimage.');> 2010 Jun 12. [Epub ahead of print] Automatic parcellation of human cortical gyri and sulci using standard anatomical nomenclature. Destrieux C http://www.ncbi.nlm.nih.gov/pubmed?term=%22Destrieux%20C%22%5BAuthor%5D, Fischl B http://www.ncbi.nlm.nih.gov/pubmed?term=%22Fischl%20B%22%5BAuthor%5D, Dale A http://www.ncbi.nlm.nih.gov/pubmed?term=%22Dale%20A%22%5BAuthor%5D, Halgren E http://www.ncbi.nlm.nih.gov/pubmed?term=%22Halgren%20E%22%5BAuthor%5D.
Cheers
It is my understanding that these are defined based on the Duvernoy atlas. If this is not the case, please let me know.
Lena Palaniyappan wrote:
Dear Christophe and team
I am writing up something on frontal measures derived from 2009 Destrieux atlas – I need to know the anatomical boundaries for frontomarginal, orbital H shaped sulcus, and the three inferior, middle and superior gyrus and sulcus: is there a place where I can find these descriptions? Cheers Lena
On 06/07/2010 23:11, "Christophe Destrieux" christophe.destrieux@univ-tours.fr wrote:
Hi Alex I'm running fs on debian boxes here and they run the freesurfer-Linux-centos4-stable-pub-vX.X.X version, without any need to recompile sources cheers > Hey Everyone, > I searched through the archives and it seems to be that there is an > intent to release FreeSurfer as open source eventually. However, the > most recent post about that that I could find was from a year or two > ago. Is there any update on this or plan for when this will happen? > The reason why I ask is that we're looking to run FreeSurfer on > Debian based systems, and it doesn't seem that you provide packages for > those systems. I would be happy to compile and package this software > and make it available to the community if the source was available, or > made available. > Thank you for your time. I look forward to hearing back from you. > > ---Alex > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and properly > dispose of the e-mail. > > -- Christophe Destrieux, Directeur du Département Communication et Multimedia http://med.univ-tours.fr/M0S01/0/fiche___defaultstructureksup/=1200651159612 <http://med.univ-tours.fr/M0S01/0/fiche___defaultstructureksup/&RH=1200651159612> <http://med.univ-tours.fr/M0S01/0/fiche___defaultstructureksup/&RH=1200651159612> Laboratoire d'Anatomie - Faculté de Médecine - 10 Bd Tonnellé 37032 Tours - France tel (33) 2 47 36 61 36 - fax (33) 2 47 36 62 07 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
*Lena Palaniyappan *Clinical Lecturer & Honorary StR | Division of Psychiatry ( University of Nottingham) South Block 'A' floor| Queens Medical Centre | Nottingham | NG7 2UH
This message has been checked for viruses but the contents of an attachment may still contain software viruses which could damage your computer system: you are advised to perform your own checks. Email communications with the University of Nottingham may be monitored as permitted by UK legislation.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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freesurfer@nmr.mgh.harvard.edu
-
Alex Waite -
Anthony Dick -
Bruce Fischl -
Christophe Destrieux -
Lena Palaniyappan -
Michael Hanke -
Nick Schmansky -
Pedro Paulo de Magalhães Oliveira Junior