Hey Everyone, I searched through the archives and it seems to be that there is an intent to release FreeSurfer as open source eventually. However, the most recent post about that that I could find was from a year or two ago. Is there any update on this or plan for when this will happen? The reason why I ask is that we're looking to run FreeSurfer on Debian based systems, and it doesn't seem that you provide packages for those systems. I would be happy to compile and package this software and make it available to the community if the source was available, or made available. Thank you for your time. I look forward to hearing back from you.
---Alex
Hi Alex,
you're welcome to a source distribution now. Nick can get you one.
cheers Bruce On Tue, 6 Jul 2010, Alex Waite wrote:
Hey Everyone, I searched through the archives and it seems to be that there is an intent to release FreeSurfer as open source eventually. However, the most recent post about that that I could find was from a year or two ago. Is there any update on this or plan for when this will happen? The reason why I ask is that we're looking to run FreeSurfer on Debian based systems, and it doesn't seem that you provide packages for those systems. I would be happy to compile and package this software and make it available to the community if the source was available, or made available. Thank you for your time. I look forward to hearing back from you.
---Alex
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Excellent! This is all very good news. Is it Nick Schmansky I should be contacting? If so, I'll shoot him an email. Thanks for the quick response.
---Alex
On 07/06/2010 01:06 PM, Bruce Fischl wrote:
Hi Alex,
you're welcome to a source distribution now. Nick can get you one.
cheers Bruce On Tue, 6 Jul 2010, Alex Waite wrote:
Hey Everyone, I searched through the archives and it seems to be that there is an intent to release FreeSurfer as open source eventually. However, the most recent post about that that I could find was from a year or two ago. Is there any update on this or plan for when this will happen? The reason why I ask is that we're looking to run FreeSurfer on Debian based systems, and it doesn't seem that you provide packages for those systems. I would be happy to compile and package this software and make it available to the community if the source was available, or made available. Thank you for your time. I look forward to hearing back from you.
---Alex
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Hi,
On Tue, Jul 06, 2010 at 02:06:36PM -0400, Bruce Fischl wrote:
Hi Alex,
you're welcome to a source distribution now. Nick can get you one.
That sounds great -- what license will it be under?
Thanks in advance,
Michael
the source is still not truly open source yet, its available under the existing terms (non-commercial, non-clinical, academic-only). our intention is to create a BSD-style open source release.
n.
On Tue, 2010-07-06 at 14:22 -0400, Michael Hanke wrote:
Hi,
On Tue, Jul 06, 2010 at 02:06:36PM -0400, Bruce Fischl wrote:
Hi Alex,
you're welcome to a source distribution now. Nick can get you one.
That sounds great -- what license will it be under?
Thanks in advance,
Michael
Nick,
the 5.0 will be non-clinical? ---------------------------------------------------------- Pedro Paulo de M. Oliveira Junior Diretor de Operações Netfilter & SpeedComm Telecom -- For mobile: http://www.netfilter.com.br/mobile
On Tue, Jul 6, 2010 at 16:05, Nick Schmansky nicks@nmr.mgh.harvard.eduwrote:
the source is still not truly open source yet, its available under the existing terms (non-commercial, non-clinical, academic-only). our intention is to create a BSD-style open source release.
n.
On Tue, 2010-07-06 at 14:22 -0400, Michael Hanke wrote:
Hi,
On Tue, Jul 06, 2010 at 02:06:36PM -0400, Bruce Fischl wrote:
Hi Alex,
you're welcome to a source distribution now. Nick can get you one.
That sounds great -- what license will it be under?
Thanks in advance,
Michael
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Hi PPJ,
yes, that's currently out of our control (due to CorTechs licensing constraints). BSD would be nice some day, but not something we can do at the moment.
cheers Bruce
On Tue, 6 Jul 2010, Pedro Paulo de Magalhães Oliveira Junior wrote:
Nick,
the 5.0 will be non-clinical?
Pedro Paulo de M. Oliveira Junior Diretor de Operações Netfilter & SpeedComm Telecom -- For mobile: http://www.netfilter.com.br/mobile
On Tue, Jul 6, 2010 at 16:05, Nick Schmansky nicks@nmr.mgh.harvard.eduwrote:
the source is still not truly open source yet, its available under the existing terms (non-commercial, non-clinical, academic-only). our intention is to create a BSD-style open source release.
n.
On Tue, 2010-07-06 at 14:22 -0400, Michael Hanke wrote:
Hi,
On Tue, Jul 06, 2010 at 02:06:36PM -0400, Bruce Fischl wrote:
Hi Alex,
you're welcome to a source distribution now. Nick can get you one.
That sounds great -- what license will it be under?
Thanks in advance,
Michael
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Hi Alex
I'm running fs on debian boxes here and they run the freesurfer-Linux-centos4-stable-pub-vX.X.X version, without any need to recompile sources
cheers
Hey Everyone, I searched through the archives and it seems to be that there is an intent to release FreeSurfer as open source eventually. However, the most recent post about that that I could find was from a year or two ago. Is there any update on this or plan for when this will happen? The reason why I ask is that we're looking to run FreeSurfer on Debian based systems, and it doesn't seem that you provide packages for those systems. I would be happy to compile and package this software and make it available to the community if the source was available, or made available. Thank you for your time. I look forward to hearing back from you.
---Alex
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Dear Christophe and team
I am writing up something on frontal measures derived from 2009 Destrieux atlas I need to know the anatomical boundaries for frontomarginal, orbital H shaped sulcus, and the three inferior, middle and superior gyrus and sulcus: is there a place where I can find these descriptions? Cheers Lena
On 06/07/2010 23:11, "Christophe Destrieux" christophe.destrieux@univ-tours.fr wrote:
Hi Alex
I'm running fs on debian boxes here and they run the freesurfer-Linux-centos4-stable-pub-vX.X.X version, without any need to recompile sources
cheers
Hey Everyone, I searched through the archives and it seems to be that there is an intent to release FreeSurfer as open source eventually. However, the most recent post about that that I could find was from a year or two ago. Is there any update on this or plan for when this will happen? The reason why I ask is that we're looking to run FreeSurfer on Debian based systems, and it doesn't seem that you provide packages for those systems. I would be happy to compile and package this software and make it available to the community if the source was available, or made available. Thank you for your time. I look forward to hearing back from you.
---Alex
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it
is
addressed. If you believe this e-mail was sent to you in error and the
contains patient information, please contact the Partners Compliance
HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in
error
but does not contain patient information, please contact the sender and
properly
dispose of the e-mail.
-- Christophe Destrieux,
Directeur du Département Communication et Multimedia http://med.univ-tours.fr/M0S01/0/fiche___defaultstructureksup/=1200651159612 http://med.univ-tours.fr/M0S01/0/fiche___defaultstructureksup/&RH=12006511596 12 http://med.univ-tours.fr/M0S01/0/fiche___defaultstructureksup/&RH=1200651 159612
Laboratoire d'Anatomie - Faculté de Médecine - 10 Bd Tonnellé 37032 Tours - France tel (33) 2 47 36 61 36 - fax (33) 2 47 36 62 07
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Lena Palaniyappan Clinical Lecturer & Honorary StR | Division of Psychiatry ( University of Nottingham) South Block 'A' floor| Queens Medical Centre | Nottingham | NG7 2UH
This message has been checked for viruses but the contents of an attachment may still contain software viruses which could damage your computer system: you are advised to perform your own checks. Email communications with the University of Nottingham may be monitored as permitted by UK legislation.
It is my understanding that these are defined based on the Duvernoy atlas. If this is not the case, please let me know.
Lena Palaniyappan wrote:
Dear Christophe and team
I am writing up something on frontal measures derived from 2009 Destrieux atlas – I need to know the anatomical boundaries for frontomarginal, orbital H shaped sulcus, and the three inferior, middle and superior gyrus and sulcus: is there a place where I can find these descriptions? Cheers Lena
On 06/07/2010 23:11, "Christophe Destrieux" christophe.destrieux@univ-tours.fr wrote:
Hi Alex I'm running fs on debian boxes here and they run the freesurfer-Linux-centos4-stable-pub-vX.X.X version, without any need to recompile sources cheers > Hey Everyone, > I searched through the archives and it seems to be that there is an > intent to release FreeSurfer as open source eventually. However, the > most recent post about that that I could find was from a year or two > ago. Is there any update on this or plan for when this will happen? > The reason why I ask is that we're looking to run FreeSurfer on > Debian based systems, and it doesn't seem that you provide packages for > those systems. I would be happy to compile and package this software > and make it available to the community if the source was available, or > made available. > Thank you for your time. I look forward to hearing back from you. > > ---Alex > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and properly > dispose of the e-mail. > > -- Christophe Destrieux, Directeur du Département Communication et Multimedia http://med.univ-tours.fr/M0S01/0/fiche___defaultstructureksup/=1200651159612 <http://med.univ-tours.fr/M0S01/0/fiche___defaultstructureksup/&RH=1200651159612> <http://med.univ-tours.fr/M0S01/0/fiche___defaultstructureksup/&RH=1200651159612> Laboratoire d'Anatomie - Faculté de Médecine - 10 Bd Tonnellé 37032 Tours - France tel (33) 2 47 36 61 36 - fax (33) 2 47 36 62 07 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
*Lena Palaniyappan *Clinical Lecturer & Honorary StR | Division of Psychiatry ( University of Nottingham) South Block 'A' floor| Queens Medical Centre | Nottingham | NG7 2UH
This message has been checked for viruses but the contents of an attachment may still contain software viruses which could damage your computer system: you are advised to perform your own checks. Email communications with the University of Nottingham may be monitored as permitted by UK legislation.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Hi Antony and Lena
they are mainly based on Duvernoy. We just published a paper describing the borders of each parcellation :
Neuroimage. <javascript:AL_get(this, 'jour', 'Neuroimage.');> 2010 Jun 12. [Epub ahead of print] Automatic parcellation of human cortical gyri and sulci using standard anatomical nomenclature. Destrieux C http://www.ncbi.nlm.nih.gov/pubmed?term=%22Destrieux%20C%22%5BAuthor%5D, Fischl B http://www.ncbi.nlm.nih.gov/pubmed?term=%22Fischl%20B%22%5BAuthor%5D, Dale A http://www.ncbi.nlm.nih.gov/pubmed?term=%22Dale%20A%22%5BAuthor%5D, Halgren E http://www.ncbi.nlm.nih.gov/pubmed?term=%22Halgren%20E%22%5BAuthor%5D.
Cheers
It is my understanding that these are defined based on the Duvernoy atlas. If this is not the case, please let me know.
Lena Palaniyappan wrote:
Dear Christophe and team
I am writing up something on frontal measures derived from 2009 Destrieux atlas – I need to know the anatomical boundaries for frontomarginal, orbital H shaped sulcus, and the three inferior, middle and superior gyrus and sulcus: is there a place where I can find these descriptions? Cheers Lena
On 06/07/2010 23:11, "Christophe Destrieux" christophe.destrieux@univ-tours.fr wrote:
Hi Alex I'm running fs on debian boxes here and they run the freesurfer-Linux-centos4-stable-pub-vX.X.X version, without any need to recompile sources cheers > Hey Everyone, > I searched through the archives and it seems to be that there is an > intent to release FreeSurfer as open source eventually. However, the > most recent post about that that I could find was from a year or two > ago. Is there any update on this or plan for when this will happen? > The reason why I ask is that we're looking to run FreeSurfer on > Debian based systems, and it doesn't seem that you provide packages for > those systems. I would be happy to compile and package this software > and make it available to the community if the source was available, or > made available. > Thank you for your time. I look forward to hearing back from you. > > ---Alex > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and properly > dispose of the e-mail. > > -- Christophe Destrieux, Directeur du Département Communication et Multimedia http://med.univ-tours.fr/M0S01/0/fiche___defaultstructureksup/=1200651159612 <http://med.univ-tours.fr/M0S01/0/fiche___defaultstructureksup/&RH=1200651159612> <http://med.univ-tours.fr/M0S01/0/fiche___defaultstructureksup/&RH=1200651159612> Laboratoire d'Anatomie - Faculté de Médecine - 10 Bd Tonnellé 37032 Tours - France tel (33) 2 47 36 61 36 - fax (33) 2 47 36 62 07 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
*Lena Palaniyappan *Clinical Lecturer & Honorary StR | Division of Psychiatry ( University of Nottingham) South Block 'A' floor| Queens Medical Centre | Nottingham | NG7 2UH
This message has been checked for viruses but the contents of an attachment may still contain software viruses which could damage your computer system: you are advised to perform your own checks. Email communications with the University of Nottingham may be monitored as permitted by UK legislation.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu