Hi Anastasia, I have run another subject with the same error.After finish bedpostsQueuing post processing stage[iMac-di-Stefano:freesurfer/subjects/subject_prova] Stefano% trac-all -path -c $FREESURFER_HOME/dmrirc_single_subject5INFO: SUBJECTS_DIR is /Applications/freesurfer/subjects/subject_provaINFO: Diffusion root is /Applications/freesurfer/subjects/subject_provaActual FREESURFER_HOME /Applications/freesurfertrac-paths -c /Applications/freesurfer/subjects/subject_prova/Con05/scripts/dmrirc.local -log /Applications/freesurfer/subjects/subject_prova/Con05/scripts/trac-all.log -cmd /Applications/freesurfer/subjects/subject_prova/Con05/scripts/trac-all.cmd#-------------------------------------/Applications/freesurfer/bin/trac-paths #-------------------------------------#@# Path reconstruction Wed Feb 13 08:20:51 CET 2013/Applications/freesurfer/bin/dmri_paths --outdir /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fminor_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slft_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slft_PP_avg33_mni_flt --dwi /Applications/freesurfer/subjects/subject_prova/Con05/dmri/dwi.nii.gz --grad /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvecs --bval /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvals --mask /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end1_dil.nii.gz --roi2 /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end2_dil.nii.gz --reg /Applications/freesurfer/subjects/subject_prova/Con05/dmri/xfms/diff2mni.flt.mat --init /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/fmajor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/fminor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.slft_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slft_PP_avg33_mni_flt_cpts_5.txt --nprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnids --lprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsids --seg /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 5000 --nu 0 --nk 5
cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_paths --outdir /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fminor_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slft_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slft_PP_avg33_mni_flt --dwi /Applications/freesurfer/subjects/subject_prova/Con05/dmri/dwi.nii.gz --grad /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvecs --bval /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvals --mask /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end1_dil.nii.gz --roi2 /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end2_dil.nii.gz --reg /Applications/freesurfer/subjects/subject_prova/Con05/dmri/xfms/diff2mni.flt.mat --init /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/fmajor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/fminor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.slft_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slft_PP_avg33_mni_flt_cpts_5.txt --nprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnids --lprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsids --seg /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 5000 --nu 0 --nk 5 sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoOutput directory: /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fminor_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slft_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slft_PP_avg33_mni_fltDWIs: /Applications/freesurfer/subjects/subject_prova/Con05/dmri/dwi.nii.gzGradients: /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvecsB-values: /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvalsMask: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gzBEDPOST directory: /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostXMax number of tracts per voxel: 2Tract volume fraction threshold: 0.05Initial control point file: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/fmajor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/fminor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.slft_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slft_PP_avg33_mni_flt_cpts_5.txtEnd ROI 1: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end1_dil.nii.gzEnd ROI 2: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end2_dil.nii.gzNeighbor aseg prior: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnpriorNeighbor aseg label ID list: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnidsLocal aseg prior: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fspriorLocal aseg label ID list: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsidsSegmentation map: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/aparc+aseg.nii.gzType of aseg prior: 0DWI-to-atlas affine registration: /Applications/freesurfer/subjects/subject_prova/Con05/dmri/xfms/diff2mni.flt.matNumber of burn-in samples: 200Number of post-burn-in samples: 5000Keep every: 5-th sampleUpdate proposal every: 0-th sampleLoading spline control points from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txtLoading spline mask from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gzCreating output directory /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg33_mni_fltLoading DWIs from /Applications/freesurfer/subjects/subject_prova/Con05/dmri/dwi.nii.gzLoading mask from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gzLoading BEDPOST parameter samples from /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostXniiRead(): error opening file /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX/merged_ph1samples.nii.gzERROR: Could not read /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX/merged_ph1samples.nii.gzDarwin iMac-di-Stefano.local 12.2.1 Darwin Kernel Version 12.2.1: Thu Oct 18 12:13:47 PDT 2012; root:xnu-2050.20.9~1/RELEASE_X86_64 x86_64 trac-paths exited with ERRORS at Wed Feb 13 08:20:52 CET 2013 [iMac-di-Stefano:freesurfer/subjects/subject_prova] Stefano%
Thanks, Stefano
----Messaggio originale---- Da: ayendiki@nmr.mgh.harvard.edu Data: 13-feb-2013 0.43 A: stdp82@virgilio.it Ogg: Re: R: Re: R: [Freesurfer] R: Re: R: trac-all -path error
Bedpostx hasn't finished running. You have to wait for it to finish.
On Wed, 13 Feb 2013, stdp82@virgilio.it wrote:
Yes, I clearly understand it. I have this error after -path step
Loading mask from /Applications/freesurfer/subjects/subject_prova/Con02/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from
/Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX
niiRead(): error opening file /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz ERROR: Could not read /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz
after prep and bedpostx I have these folder file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/mri/ file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/ file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri.bedpostX/ file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/scripts/ file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dpath/ file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dlabel/ file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/stats/ file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/label/ file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/rh.EC_average/ file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/lh.EC_average/ file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/fsaverage/ file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/touch/ file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/surf/ file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/bem/ file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/src/ file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/tmp/ file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/trash/ file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/bvecs.txt file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/bvals.txt file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/data.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/MPRAGE.nii.gz
particularly in dmri.bedpostx I have: file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/brain_anat_mni.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/brain_anat_orig.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/brain_anat.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/bvals file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/bvecs file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0000.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0001.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0002.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0003.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0004.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0005.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0006.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0007.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0008.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0009.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0010.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0011.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0012.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0013.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0014.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0015.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0016.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0017.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0018.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0019.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0020.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0021.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0022.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0023.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0024.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0025.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0026.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0027.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0028.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0029.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0030.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0031.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0032.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0033.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0034.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0035.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0036.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0037.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0038.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0039.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0040.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0041.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0042.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0043.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0044.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0045.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0046.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0047.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0048.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0049.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0050.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0051.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0052.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0053.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0054.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0055.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0056.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0057.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0058.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0059.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0060.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0061.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0062.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0063.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0064.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0065.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0066.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0067.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0068.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0069.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0070.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0071.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0072.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0073.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0074.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0075.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0076.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0077.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0078.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0079.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0080.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0081.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0082.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0083.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0084.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0085.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0086.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0087.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0088.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0089.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0090.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0091.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0092.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0093.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0094.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0095.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0096.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0097.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0098.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0099.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0100.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0101.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0102.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0103.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0104.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0105.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0106.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0107.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0108.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0109.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0110.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0111.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0112.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0113.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0114.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0115.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0116.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0117.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0118.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0119.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0120.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0121.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0122.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0123.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0124.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0125.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0126.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0127.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0128.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0129.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0130.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0131.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0132.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0133.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0134.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0135.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0136.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0137.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0138.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0139.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0140.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0141.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0142.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0143.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0144.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0145.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0146.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0147.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0148.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0149.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0150.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0151.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0152.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0153.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0154.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0155.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0156.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0157.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0158.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0159.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0160.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0161.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0162.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0163.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0164.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0165.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0166.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0167.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0168.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0169.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0170.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0171.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0172.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0173.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0174.nii.gz 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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi_orig.mghdti.bvecs file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi_orig.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi_snr.txt file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi.ecclog file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/lowb_brain_anat.flt.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/lowb_brain_mni.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/lowb_brain.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/lowb.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/mni/ file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0000.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0001.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0002.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0003.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0004.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0005.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0006.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0007.nii .gz 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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0016.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0017.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0018.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0019.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0020.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0021.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0022.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0023.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0024.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0025.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0026.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0027.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0028.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0029.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0030.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0031.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0032.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0033.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0034.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0035.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0036.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0037.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0038.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0039.nii .gz 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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0048.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0049.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0050.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0051.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0052.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0053.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0054.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0055.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0056.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0057.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0058.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0059.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0060.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0061.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0062.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0063.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0064.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0065.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0066.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0067.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0068.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0069.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0070.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0071.nii .gz 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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0136.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0137.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0138.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0139.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0140.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0141.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0142.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0143.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0144.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0145.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0146.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0147.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0148.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0149.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0150.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0151.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0152.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0153.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0154.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0155.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0156.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0157.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0158.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0159.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0160.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0161.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0162.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0163.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0164.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0165.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0166.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0167.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0168.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0169.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0170.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0171.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0172.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0173.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0174.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0175.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0176.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0177.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0178.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0179.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0180.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0181.nii .gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask.nii.gz file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/xfms/ Segmentation map: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/aparc+aseg.nii.gzType of aseg prior: 0DWI-to-atlas affine registration: /Applications/freesurfer/subjects/subject_prova/Con05/dmri/xfms/diff2mni.flt.matNumber of burn-in samples: 200Number of post-burn-in samples: 5000Keep every: 5-th sampleUpdate proposal every: 0-th sampleLoading spline control points from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txtLoading spline mask from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gzCreating output directory /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg33_mni_fltLoading DWIs from /Applications/freesurfer/subjects/subject_prova/Con05/dmri/dwi.nii.gzLoading mask from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gzLoading BEDPOST parameter samples from /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostXniiRead(): error opening file /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX/merged_ph1samples.nii.gzERROR: Could not read /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX/merged_ph1samples.nii.gzDarwin iMac-di-Stefano.local 12.2.1 Darwin Kernel Version 12.2.1: Thu Oct 18 12:13:47 PDT 2012; root:xnu-2050.20.9~1/RELEASE_X86_64 x86_64
trac-paths exited with ERRORS at Wed Feb 13 08:20:52 CET 2013> Thanks,
Stefano
----Messaggio originale---- Da: ayendiki@nmr.mgh.harvard.edu Data: 13-feb-2013 0.06 A: stdp82@virgilio.it Cc: freesurfer@nmr.mgh.harvard.edu Ogg: Re: R: [Freesurfer] R: Re: R: trac-all -path error
Hi Stefano - The order of the 3 trac-all steps is not inter-changeable. You need to run bedpostx *before* you can run the path reconstruction.
a.y
On Wed, 13 Feb 2013, stdp82@virgilio.it wrote:
Thank you Anastasia. But I do not understand why I have the error in trac-all -path. The configuration
file
that I have attached is good? Stefano
----Messaggio originale---- Da: stdp82@virgilio.it Data: 12-feb-2013 23.27 A: ayendiki@nmr.mgh.harvard.edu Cc: freesurfer@nmr.mgh.harvard.edu Ogg: [Freesurfer] R: Re: R: trac-all -path error
Hi Anastasia, thanks! I hope that is all ok in Boston.
I'm attaching the configuration file that I'm using.
I'd like ask you if/how I can also run the second step of trac-all (bedpostx) using FSL on other pc? May I directly run in FSL dmri folder? Do you think that I should rename some files?
An additional question. For some subjects (no for subject that I'm running with the config file that I
have
attached) I have 16 direction and b=0 is the last of these. Is the nb0=16?
Thank you very much.
Stefano
----Messaggio originale---- Da: ayendiki@nmr.mgh.harvard.edu Data: 12-feb-2013 17.45 A: stdp82@virgilio.it Cc: freesurfer@nmr.mgh.harvard.edu Ogg: Re: [Freesurfer] R: trac-all -path error
Hi Stefano - There is no need to attach the trac-all script, I am quite familiar with it. Perhaps you could attach the configuration file that you set up?
Thanks, a.y
On Mon, 11 Feb 2013, stdp82@virgilio.it wrote:
I'm attaching my trac-all file for check.Thanks,
Stefano
----Messaggio originale---- Da: stdp82@virgilio.it Data: 11-feb-2013 14.42 A: freesurfer@nmr.mgh.harvard.edu Cc: ayendiki@nmr.mgh.harvard.edu Ogg: [Freesurfer] trac-all -path error
Hi list, I'm running trac-all -path -c $FREESURFER/dmrirc_single_subject but I have this error:
Loading mask from /Applications/freesurfer/subjects/subject_prova/Con02/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from
/Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX
niiRead(): error opening file /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz ERROR: Could not read /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz
From http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg22066.html I'm deducing that the error may be related trace-all upload.
I have doing this upload but I visualize always the same error.
I attached tract-all uploades file that live in /Applications/freesurfer/bin.
Please, could you check it?
I have also other question. May I run the second step of trac-all (bedpostx) using FSL on other pc? In
this
way, could I directly run in FSL dmri folder? Do you think that I should rename some files?
Thanks,
Stefano
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Hi Stefano,
Question: https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2012-August/025298.htm...
Answer: https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2012-August/025303.htm...
Hope this helps!
/Eugenio
On Wed, 2013-02-13 at 08:27 +0100, stdp82@virgilio.it wrote:
Hi Anastasia,
I have run another subject with the same error. After finish bedposts Queuing post processing stage [iMac-di-Stefano:freesurfer/subjects/subject_prova] Stefano% trac-all -path -c $FREESURFER_HOME/dmrirc_single_subject5 INFO: SUBJECTS_DIR is /Applications/freesurfer/subjects/subject_prova INFO: Diffusion root is /Applications/freesurfer/subjects/subject_prova Actual FREESURFER_HOME /Applications/freesurfer trac-paths -c /Applications/freesurfer/subjects/subject_prova/Con05/scripts/dmrirc.local -log /Applications/freesurfer/subjects/subject_prova/Con05/scripts/trac-all.log -cmd /Applications/freesurfer/subjects/subject_prova/Con05/scripts/trac-all.cmd #------------------------------------- /Applications/freesurfer/bin/trac-paths #------------------------------------- #@# Path reconstruction Wed Feb 13 08:20:51 CET 2013 /Applications/freesurfer/bin/dmri_paths --outdir /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fminor_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slft_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slft_PP_avg33_mni_flt --dwi /Applications/freesurfer/subjects/subject_prova/Con05/dmri/dwi.nii.gz --grad /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvecs --bval /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvals --mask /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end1_dil.nii.gz --roi2 /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end2_dil.nii.gz --reg /Applications/freesurfer/subjects/subject_prova/Con05/dmri/xfms/diff2mni.flt.mat --init /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/fmajor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/fminor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.slft_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slft_PP_avg33_mni_flt_cpts_5.txt --nprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnids --lprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsids --seg /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 5000 --nu 0 --nk 5
cwd /Applications/freesurfer/subjects/subject_prova cmdline /Applications/freesurfer/bin/dmri_paths --outdir /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fminor_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slft_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slft_PP_avg33_mni_flt --dwi /Applications/freesurfer/subjects/subject_prova/Con05/dmri/dwi.nii.gz --grad /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvecs --bval /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvals --mask /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end1_dil.nii.gz --roi2 /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end2_dil.nii.gz --reg /Applications/freesurfer/subjects/subject_prova/Con05/dmri/xfms/diff2mni.flt.mat --init /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/fmajor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/fminor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.slft_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slft_PP_avg33_mni_flt_cpts_5.txt --nprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnids --lprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsids --seg /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 5000 --nu 0 --nk 5 sysname Darwin hostname iMac-di-Stefano.local machine x86_64 user Stefano Output directory: /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fminor_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slft_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slft_PP_avg33_mni_flt DWIs: /Applications/freesurfer/subjects/subject_prova/Con05/dmri/dwi.nii.gz Gradients: /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvecs B-values: /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvals Mask: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gz BEDPOST directory: /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/fmajor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/fminor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.slft_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slft_PP_avg33_mni_flt_cpts_5.txt End ROI 1: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end1_dil.nii.gz End ROI 2: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end2_dil.nii.gz Neighbor aseg prior: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnprior Neighbor aseg label ID list: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnids Local aseg prior: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsprior Local aseg label ID list: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsids Segmentation map: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/aparc+aseg.nii.gz Type of aseg prior: 0 DWI-to-atlas affine registration: /Applications/freesurfer/subjects/subject_prova/Con05/dmri/xfms/diff2mni.flt.mat Number of burn-in samples: 200 Number of post-burn-in samples: 5000 Keep every: 5-th sample Update proposal every: 0-th sample Loading spline control points from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txt Loading spline mask from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Creating output directory /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg33_mni_flt Loading DWIs from /Applications/freesurfer/subjects/subject_prova/Con05/dmri/dwi.nii.gz Loading mask from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX niiRead(): error opening file /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX/merged_ph1samples.nii.gz ERROR: Could not read /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX/merged_ph1samples.nii.gz Darwin iMac-di-Stefano.local 12.2.1 Darwin Kernel Version 12.2.1: Thu Oct 18 12:13:47 PDT 2012; root:xnu-2050.20.9~1/RELEASE_X86_64 x86_64
trac-paths exited with ERRORS at Wed Feb 13 08:20:52 CET 2013
[iMac-di-Stefano:freesurfer/subjects/subject_prova] Stefano%
Thanks,
Stefano
----Messaggio originale---- Da: ayendiki@nmr.mgh.harvard.edu Data: 13-feb-2013 0.43 A: stdp82@virgilio.it Ogg: Re: R: Re: R: [Freesurfer] R: Re: R: trac-all -path error
Bedpostx hasn't finished running. You have to wait for it to finish.
On Wed, 13 Feb 2013, stdp82@virgilio.it wrote:
Yes, I clearly understand it. I have this error after -path step
Loading mask from
/Applications/freesurfer/subjects/subject_prova/Con02/dlabel/diff/aparc+aseg_mask.bbr.nii.gz
Loading BEDPOST parameter samples from
/Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX
niiRead(): error opening file
/Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz
ERROR: Could not read
/Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz after prep and bedpostx I have these folder
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/mri/
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri.bedpostX/
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/scripts/
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dpath/
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dlabel/
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/stats/
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/label/
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/rh.EC_average/
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/lh.EC_average/
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/fsaverage/
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/touch/
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/surf/
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/bem/
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/src/
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/tmp/
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/trash/
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/bvecs.txt
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/bvals.txt
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/data.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/MPRAGE.nii.gz
particularly in dmri.bedpostx I have:
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/brain_anat_mni.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/brain_anat_orig.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/brain_anat.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/bvals
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/bvecs
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0000.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0001.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0002.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0003.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0004.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0005.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0006.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0007.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0008.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0009.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0010.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0011.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0012.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0013.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0014.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0015.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0016.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0017.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0018.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0019.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0020.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0021.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0022.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0023.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0024.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0025.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0026.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0027.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0028.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0029.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0030.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0031.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0032.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0033.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0034.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0035.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0036.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0037.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0038.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0039.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0040.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0041.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0042.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0043.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0044.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0045.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0046.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0047.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0048.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0049.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0050.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0051.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0052.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0053.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0054.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0055.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0056.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0057.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0058.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0059.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0060.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0061.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0062.nii.gz
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_FA.nii.gz
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi_orig.mghdti.bvals
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0061.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0062.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0066.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0086.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0088.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0089.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0090.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0091.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0092.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0093.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0094.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0095.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0096.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0097.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0098.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0099.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0100.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0101.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0102.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0103.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0104.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0105.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0106.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0107.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0108.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0109.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0110.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0111.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0112.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0113.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0114.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0115.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0116.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0117.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0118.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0119.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0120.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0121.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0122.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0123.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0124.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0125.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0126.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0127.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0128.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0129.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0130.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0131.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0132.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0133.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0134.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0135.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0136.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0137.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0138.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0139.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0140.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0141.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0142.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0143.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0144.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0145.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0146.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0147.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0148.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0149.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0150.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0151.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0152.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0153.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0154.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0155.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0156.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0157.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0158.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0159.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0160.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0161.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0162.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0163.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0164.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0165.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0166.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0167.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0168.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0169.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0170.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0175.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0176.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0177.nii
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file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0178.nii
.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0179.nii
.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0180.nii
.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0181.nii
.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask.nii.gz
file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/xfms/
Segmentation map: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/aparc+aseg.nii.gz Type of aseg prior: 0 DWI-to-atlas affine registration: /Applications/freesurfer/subjects/subject_prova/Con05/dmri/xfms/diff2mni.flt.mat Number of burn-in samples: 200 Number of post-burn-in samples: 5000 Keep every: 5-th sample Update proposal every: 0-th sample Loading spline control points from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txt Loading spline mask from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Creating output directory /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg33_mni_flt Loading DWIs from /Applications/freesurfer/subjects/subject_prova/Con05/dmri/dwi.nii.gz Loading mask from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX niiRead(): error opening file /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX/merged_ph1samples.nii.gz ERROR: Could not read /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX/merged_ph1samples.nii.gz Darwin iMac-di-Stefano.local 12.2.1 Darwin Kernel Version 12.2.1: Thu Oct 18 12:13:47 PDT 2012; root:xnu-2050.20.9~1/RELEASE_X86_64 x86_64
trac-paths exited with ERRORS at Wed Feb 13 08:20:52 CET 2013
Thanks,
Stefano
----Messaggio originale---- Da: ayendiki@nmr.mgh.harvard.edu Data: 13-feb-2013 0.06 A: stdp82@virgilio.it Cc: freesurfer@nmr.mgh.harvard.edu Ogg: Re: R: [Freesurfer] R: Re: R: trac-all -path error
Hi Stefano - The order of the 3 trac-all steps is not
inter-changeable.
You need to run bedpostx *before* you can run the path
reconstruction.
a.y
On Wed, 13 Feb 2013, stdp82@virgilio.it wrote:
Thank you Anastasia. But I do not understand why I have the error
in trac-all -path. The configuration
file
that I have attached is good? Stefano
----Messaggio originale---- Da: stdp82@virgilio.it Data: 12-feb-2013 23.27 A: ayendiki@nmr.mgh.harvard.edu Cc: freesurfer@nmr.mgh.harvard.edu Ogg: [Freesurfer] R: Re: R: trac-all -path error
Hi Anastasia, thanks! I hope that is all ok in Boston.
I'm attaching the configuration file that I'm using.
I'd like ask you if/how I can also run the second step of trac-all
(bedpostx) using FSL on other pc? May I
directly run in FSL dmri folder? Do you think that I should rename
some files?
An additional question. For some subjects (no for subject that I'm
running with the config file that I
have
attached) I have 16 direction and b=0 is the last of these. Is the
nb0=16?
Thank you very much.
Stefano
----Messaggio originale---- Da: ayendiki@nmr.mgh.harvard.edu Data: 12-feb-2013 17.45 A: stdp82@virgilio.it Cc: freesurfer@nmr.mgh.harvard.edu Ogg: Re: [Freesurfer] R: trac-all -path error
Hi Stefano - There is no need to attach the trac-all script, I am
quite
familiar with it. Perhaps you could attach the configuration file
that you
set up?
Thanks, a.y
On Mon, 11 Feb 2013, stdp82@virgilio.it wrote:
I'm attaching my trac-all file for check.Thanks,
Stefano
----Messaggio originale---- Da: stdp82@virgilio.it Data: 11-feb-2013 14.42 A: freesurfer@nmr.mgh.harvard.edu Cc: ayendiki@nmr.mgh.harvard.edu Ogg: [Freesurfer] trac-all -path error
Hi list, I'm running trac-all -path -c $FREESURFER/dmrirc_single_subject
but I have this error:
Loading mask from
/Applications/freesurfer/subjects/subject_prova/Con02/dlabel/diff/aparc+aseg_mask.bbr.nii.gz
Loading BEDPOST parameter samples from
/Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX
niiRead(): error opening file
/Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz
ERROR: Could not read
/Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz
From http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg22066.html
I'm deducing that the error may be related trace-all upload.
I have doing this upload but I visualize always the same error.
I attached tract-all uploades file that live
in /Applications/freesurfer/bin.
Please, could you check it?
I have also other question. May I run the second step of
trac-all (bedpostx) using FSL on other pc? In
this
way, could I directly run in FSL dmri folder? Do you think that
I should rename some files?
Thanks,
Stefano
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-
Juan Eugenio Iglesias -
stdp82＠virgilio.it