Hi Kevin

we have used it on hemispheres, but I don't think it will work on partial brains. It violates too many assumptions (e.g. topology,etc...) sorry Bruce

On Tue, 19 Jan 2016, Kevin Aquino wrote:

Dear Freesurfer list, I was wondering if anyone here has used freesurfer on anatomical scans acquired on a partial brain?

I realise that recon-all and many of the tools are suited for a full brain, but I was wondering if anyone out there has had experience making the tools work for this scenario? Not necessarily the parcellations and the full set-up, but other tools such as segmentation, creating a white and pial surface and topology fixes.

Cheers,

Dr Kevin Aquino Research fellow, Sir Peter Mansfield Magnetic Resonance Center, The University of Nottingham.

Honorary Research Fellow School of Physics, Faculty of Science, University of Sydney

E Kevin.aquino@nottingham.ac.uk, aquino@physics.usyd.edu.au | W www.physics.usyd.edu.au/~aquino/

---

The brain is a wonderful organ. It starts working the moment you get up and does not stop until you get into the office.

Robert Frost

CRICOS 00026A This email plus any attachments to it are confidential. Any unauthorised use is strictly prohibited. If you receive this email in error, please delete it and any attachments.

Please think of our environment and only print this e-mail if necessary.