External Email - Use Caution
I installed freesurfer here:
banikr2@banikr:~$ which freesurfer /usr/local/freesurfer/bin/freesurfer
I am getting the following error while running recon-all:
banikr2@banikr:~$ export SUBJECT_DIR=/home/banikr2/273_p banikr2@banikr:~$ recon-all -s sub273 -i 273_p/273_MR.nii mkdir: cannot create directory '/usr/local/freesurfer/subjects/sub273': Permission denied mkdir: cannot create directory '/usr/local/freesurfer/subjects/sub273': Permission denied mkdir: cannot create directory '/usr/local/freesurfer/subjects/sub273': Permission denied cp: cannot create regular file '/usr/local/freesurfer/subjects/sub273/scripts/build-stamp.txt': No such file or directory cat: /usr/local/freesurfer/subjects/sub273/scripts/build-stamp.txt: No such file or directory INFO: FreeSurfer build stamps do not match Subject Stamp: Current Stamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551
I found this from previous troubleshoot emails of freesurfer here: https://secure-web.cisco.com/1bocVcL-uht7sTBBGDhGvGZzup63MHVzmcTNCz1auLpZYPe... which I performed accordingly.
Any suggestions?
Rana Banik
freesurfer@nmr.mgh.harvard.edu