External Email - Use Caution
Hi Experts,
I have pre-processed some resting-state date using fMRI prep. I have the functional data on the fs_native surface in bold.func.gii format for each hemisphere. I have created some FS labels and I would like to extract the mean time course from vertices within these labels. Is it possible to use FreeSurfer tools to do this? I have a feeling mri_segstats might be the correct option, but I don't believe this can be used with GIFTI functional data. I tried the command below
* mri_segstats --slabel sub-0006 lh /home/masontwells/Documents/freesurfer/subjects/sub-0006/label/lh.wang2015atlas.V1v.label --avgwf out.dat --id 1 --i ../../post-fmriprep/sub-0006_ses-1_task-rest_acq-TR2000_space-fsnative_hemi-L_bold.func.gii
However, the terminal produces serval of these messages when the command runs:
* ** DA[599] has coordsys with intent NIFTI_INTENT_TIME_SERIES (should be NIFTI_INTENT_POINTSET)
I assume this is a sign that the command and data format are not compatible? If this is the case, can you advise on the best way to extract the mean time courses from my functional data? Will I have to resample the volume data to the surface with mri_vol2surf to get it into MGH format and then run mri_segstats?
Best wishes, Mason
Mason T Wells, MSc
PhD student
School of Optometry and Vision Sciences
& Cardiff University Brain Research
Imaging Centre (CUBRIC), School of Psychology
Cardiff University
Cardiff
CF24 4HQ
UK
Email: WellsMT1@cardiff.ac.ukmailto:WellsMT1@cardiff.ac.uk
Tel: 02920 879628
Web: Cardiff University webpagehttps://secure-web.cisco.com/1qzj6G102Hp0-GTfeJ6322xQNXQcW4GkqaH5liYvjrdTN9mVH28bjGarCyUEt0zeoSD9XRNT3Js4tOz9xJGHHbBeWJmOjIuLaSBflgcs-ry00l7JVlWM4_8E8IS8UwxZHUMbRjGiskMLtCzmZ4SdKSyev3yrgz9p10unPLJKCRAsDxjOB4LvLe39zOOF1SVol3Q84N4dfg1KrWw0nkrnNDQiQHYKJ4fPUkE_E-24hdF3JUwNAUBhTcfLYiKM0nabl_NQZwKP4lhiOGf5J08oIAg/https%3A%2F%2Fwww.cardiff.ac.uk%2Fpeople%2Fresearch-students%2Fview%2F974214-http://secure-web.cisco.com/1wKqfPd1L9yGr-NK1MFwwQm3aX2SenX1VtTlRgPt0wLl12m1S3gPKVuklTThQx5hYho6o7JRvNgFSJACPTxcEMbyloVNftwdvKXBDnY1wLcJefCiN6DPqde9TUnehUA7cYQUdSj9k2S7gezqMA0BiTKgsiB31IuF_aEAPAfITuUud8_bPUhIvfCr5Plom6p-YKBaFzDxbmKu1ApbYyWzH8R_5enHIskcMNg8jSksPE57VlCCjMHmzvhwIIRn0rOY0u-4Uak9j5yd13Yw_F2I1pA/http%3A%2F%2Fwww.cardiff.ac.uk%2Fpeople%2Fresearch-students%2Fview%2F482937-
Mason T Wells, MSc
Myfyriwr PhD
Yr Ysgol Optometreg a Gwyddorau’r Golwg
& Canolfan Ymchwil Delweddu’r Ymennydd Prifysgol Caerdydd (CUBRIC), Yr Ysgol Seicoleg
Prifysgol Caerdydd
Heol Maindy
Caerdydd
CF24 4HQ
DU
E-bost: WellsMT1@caerdydd.ac.ukmailto:WellsMT1@caerdydd.ac.uk
Ffôn: 02920 879628
External Email - Use Caution
Hi Experts,
Just a follow up to my issue below. I have extracted the time course from my pre-processed GIFTI data, despite the "DA[599] has coordsys with intent NIFTI_INTENT_TIME_SERIES (should be NIFTI_INTENT_POINTSET)" terminal messages and plotted it (see attached). It appears to have worked, but I am concerned with the messages. Can anyone let me know if it is suitable to use mri_segstats with --avgwf to extract time courses from GIFTI fMRI data?
Best wishes, Mason
Mason T Wells, MSc
PhD student
School of Optometry and Vision Sciences
& Cardiff University Brain Research
Imaging Centre (CUBRIC), School of Psychology
Cardiff University
Cardiff
CF24 4HQ
UK
Email: WellsMT1@cardiff.ac.ukmailto:WellsMT1@cardiff.ac.uk
Tel: 02920 879628
Web: Cardiff University webpagehttps://secure-web.cisco.com/1xA8x0osHI1FMTkn-2KisAaM1Z0K20yRUcdxxF5-OKrOssjA3KQs-umYT_7Xy0MCOY4eNQ1JTQz8hg7OKagVrU6CoBG8PYGxCPdTK2ATKvhRu_tI9xfhzeku9ebVkbHj4ZGPUOGwm8dZhffSD70a1zi7ox8cu3ULjfmIsYFi-mu1Op_twt250OR9s5YPcuMCPL8dvvO-yXmDzwub9jd4hoFgUfJQl8RWHJ4a7AnaJyrP7EoJ_DGRQd3ze8h7SrT0O/https%3A%2F%2Fwww.cardiff.ac.uk%2Fpeople%2Fresearch-students%2Fview%2F974214-http://secure-web.cisco.com/1ymLmooqzto7aTZFag66la7yrz4Gq_rt-Ott_BKPw40qDKFzQ_ZY1DgNrhKb0xNZsgsf7whRY0j-Ktz0ChI5615yALVAn7EqVtvtHj6mdYWIzzBUEaG_3mx-mH2KgiCoWfkl4M_g8iwPPRIrI0sori-YQd_8WQW9IFBCwlf050bZrAlcpPJgLmj_B6VkYqpsIB0O4gGFvMFVPGMv0cMDqx9bqO0VQCsNoDPfVuMzdaBeNc1Ed8wQFl7H925Jhu_w0/http%3A%2F%2Fwww.cardiff.ac.uk%2Fpeople%2Fresearch-students%2Fview%2F482937-
Mason T Wells, MSc
Myfyriwr PhD
Yr Ysgol Optometreg a Gwyddorau’r Golwg
& Canolfan Ymchwil Delweddu’r Ymennydd Prifysgol Caerdydd (CUBRIC), Yr Ysgol Seicoleg
Prifysgol Caerdydd
Heol Maindy
Caerdydd
CF24 4HQ
DU
E-bost: WellsMT1@caerdydd.ac.ukmailto:WellsMT1@caerdydd.ac.uk
Ffôn: 02920 879628
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Mason Wells WellsMT1@cardiff.ac.uk Sent: Wednesday, December 9, 2020 11:05 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu; freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu Subject: [Freesurfer] Extracted mean timecourse from FS label
External Email - Use Caution
Hi Experts,
I have pre-processed some resting-state date using fMRI prep. I have the functional data on the fs_native surface in bold.func.gii format for each hemisphere. I have created some FS labels and I would like to extract the mean time course from vertices within these labels. Is it possible to use FreeSurfer tools to do this? I have a feeling mri_segstats might be the correct option, but I don't believe this can be used with GIFTI functional data. I tried the command below
* mri_segstats --slabel sub-0006 lh /home/masontwells/Documents/freesurfer/subjects/sub-0006/label/lh.wang2015atlas.V1v.label --avgwf out.dat --id 1 --i ../../post-fmriprep/sub-0006_ses-1_task-rest_acq-TR2000_space-fsnative_hemi-L_bold.func.gii
However, the terminal produces serval of these messages when the command runs:
* ** DA[599] has coordsys with intent NIFTI_INTENT_TIME_SERIES (should be NIFTI_INTENT_POINTSET)
I assume this is a sign that the command and data format are not compatible? If this is the case, can you advise on the best way to extract the mean time courses from my functional data? Will I have to resample the volume data to the surface with mri_vol2surf to get it into MGH format and then run mri_segstats?
Best wishes, Mason
Mason T Wells, MSc
PhD student
School of Optometry and Vision Sciences
& Cardiff University Brain Research
Imaging Centre (CUBRIC), School of Psychology
Cardiff University
Cardiff
CF24 4HQ
UK
Email: WellsMT1@cardiff.ac.ukmailto:WellsMT1@cardiff.ac.uk
Tel: 02920 879628
Web: Cardiff University webpagehttps://secure-web.cisco.com/16HDTfvtb7-0fbEJgBGRm8OCLZVIBQ0iVdl2kRJSd6NJgdYUh-dSldLoL9pWo5SzOzplcF8jLKZnARlVgriKAmfa1LtPEaXTgKhyTc70DF6o-32D4neb6KcKduoKgSTjUD5GKVvFM91wsdNrIhHhN1VbCx3mKtaXZcIL9gQDv-1JzwF0FN65YI4a1q8preURtxLzp0ZLIQ1fSjib9pR_UljQpqCVuChreORKZQoYZN_itwtbk-IP7tpy2XvM6dfb4/https%3A%2F%2Feur03.safelinks.protection.outlook.com%2F%3Furl%3Dhttps%253A%252F%252Fsecure-web.cisco.com%252F1qzj6G102Hp0-GTfeJ6322xQNXQcW4GkqaH5liYvjrdTN9mVH28bjGarCyUEt0zeoSD9XRNT3Js4tOz9xJGHHbBeWJmOjIuLaSBflgcs-ry00l7JVlWM4_8E8IS8UwxZHUMbRjGiskMLtCzmZ4SdKSyev3yrgz9p10unPLJKCRAsDxjOB4LvLe39zOOF1SVol3Q84N4dfg1KrWw0nkrnNDQiQHYKJ4fPUkE_E-24hdF3JUwNAUBhTcfLYiKM0nabl_NQZwKP4lhiOGf5J08oIAg%252Fhttps%25253A%25252F%25252Fwww.cardiff.ac.uk%25252Fpeople%25252Fresearch-students%25252Fview%25252F974214-%26data%3D04%257C01%257CWellsMT1%2540cardiff.ac.uk%257C4f5c1f20c6604568be6808d89c32dae9%257Cbdb74b3095684856bdbf06759778fcbc%257C1%257C0%257C637431089516312831%257CUnknown%257CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%253D%257C1000%26sdata%3DeLDzGu%252BhwRo2R3Oml8eYoRACIUvY5M6kSQfIYiKUHCY%253D%26reserved%3D0https://secure-web.cisco.com/1VauQFyyTrf4EdNwHRSmtsXZiE4Brm8PoKn5YTCjqc2DXeCPnCtQ0aAToudxh-DBN3D4jaQaCleIX_SAIk25vSgKq0G0tBA-MZvDUv9GaUqe8VMwDg6zbT8_YMEhoHbqHkg4mcX8Ipmo56Ovu0Jkx3PR115ACmxF-0Fvyexuf34I--YLvcoK4jLHJmxMA7fDtuP3PkKTJdO-JU3Qaq58EHm-E-wN-d-JQPOW4V9MpK1IYYI-95X0z9ipkf2sqvyqQ/https%3A%2F%2Feur03.safelinks.protection.outlook.com%2F%3Furl%3Dhttp%253A%252F%252Fsecure-web.cisco.com%252F1wKqfPd1L9yGr-NK1MFwwQm3aX2SenX1VtTlRgPt0wLl12m1S3gPKVuklTThQx5hYho6o7JRvNgFSJACPTxcEMbyloVNftwdvKXBDnY1wLcJefCiN6DPqde9TUnehUA7cYQUdSj9k2S7gezqMA0BiTKgsiB31IuF_aEAPAfITuUud8_bPUhIvfCr5Plom6p-YKBaFzDxbmKu1ApbYyWzH8R_5enHIskcMNg8jSksPE57VlCCjMHmzvhwIIRn0rOY0u-4Uak9j5yd13Yw_F2I1pA%252Fhttp%25253A%25252F%25252Fwww.cardiff.ac.uk%25252Fpeople%25252Fresearch-students%25252Fview%25252F482937-%26data%3D04%257C01%257CWellsMT1%2540cardiff.ac.uk%257C4f5c1f20c6604568be6808d89c32dae9%257Cbdb74b3095684856bdbf06759778fcbc%257C1%257C0%257C637431089516322825%257CUnknown%257CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%253D%257C1000%26sdata%3D0SgIJwGjOwk3vpINPyVps3g7%252F7POs%252BupklHtZ6wMylk%253D%26reserved%3D0
Mason T Wells, MSc
Myfyriwr PhD
Yr Ysgol Optometreg a Gwyddorau’r Golwg
& Canolfan Ymchwil Delweddu’r Ymennydd Prifysgol Caerdydd (CUBRIC), Yr Ysgol Seicoleg
Prifysgol Caerdydd
Heol Maindy
Caerdydd
CF24 4HQ
DU
E-bost: WellsMT1@caerdydd.ac.ukmailto:WellsMT1@caerdydd.ac.uk
Ffôn: 02920 879628
I don't know, that msg probably comes from the gifti code we link to. It looks like it is just a warning. Do the output waveforms look ok?
On 12/9/2020 6:05 AM, Mason Wells wrote:
External Email - Use Caution
Hi Experts,
I have pre-processed some resting-state date using fMRI prep. I have the functional data on the fs_native surface in bold.func.gii format for each hemisphere. I have created some FS labels and I would like to extract the mean time course from vertices within these labels. Is it possible to use FreeSurfer tools to do this? I have a feeling mri_segstats might be the correct option, but I don't believe this can be used with GIFTI functional data. I tried the command below
* mri_segstats --slabel sub-0006 lh /home/masontwells/Documents/freesurfer/subjects/sub-0006/label/lh.wang2015atlas.V1v.label --avgwf out.dat --id 1 --i ../../post-fmriprep/sub-0006_ses-1_task-rest_acq-TR2000_space-fsnative_hemi-L_bold.func.gii
However, the terminal produces serval of these messages when the command runs:
* ** DA[599] has coordsys with intent NIFTI_INTENT_TIME_SERIES (should be NIFTI_INTENT_POINTSET)
I assume this is a sign that the command and data format are not compatible? If this is the case, can you advise on the best way to extract the mean time courses from my functional data? Will I have to resample the volume data to the surface with mri_vol2surf to get it into MGH format and then run mri_segstats?
Best wishes, Mason
Mason T Wells, MSc
PhD student
School of Optometry and Vision Sciences
& Cardiff University Brain Research
Imaging Centre (CUBRIC), School of Psychology
Cardiff University
Cardiff
CF24 4HQ
UK
Email: WellsMT1@cardiff.ac.ukmailto:WellsMT1@cardiff.ac.uk
Tel: 02920 879628
Mason T Wells, MSc
Myfyriwr PhD
Yr Ysgol Optometreg a Gwyddorau’r Golwg
& Canolfan Ymchwil Delweddu’r Ymennydd Prifysgol Caerdydd (CUBRIC), Yr Ysgol Seicoleg
Prifysgol Caerdydd
Heol Maindy
Caerdydd
CF24 4HQ
DU
E-bost: WellsMT1@caerdydd.ac.ukmailto:WellsMT1@caerdydd.ac.uk
Ffôn: 02920 879628
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Hi Doug,
The waveforms look OK to me but was worried that the message was suggesting the command was not suitable with GIFTI data. Is there a way I can double check I'm good to carry on with the extractions?
Cheers, Mason
Mason T Wells, MSc
PhD student
School of Optometry and Vision Sciences
& Cardiff University Brain Research
Imaging Centre (CUBRIC), School of Psychology
Cardiff University
Cardiff
CF24 4HQ
UK
Email: WellsMT1@cardiff.ac.ukmailto:WellsMT1@cardiff.ac.uk
Tel: 02920 879628
Web: Cardiff University webpagehttps://secure-web.cisco.com/1LQzzNf-MzUrTr2hGnNCunoDeWI5nr5U6ruKx_nFYsW0tBMMKOPAYKq1cvrf_s2Oi5K-X8byablEbTNgeAVpr9VNr1dhxKL2oUitSBnPSwQ0Af-cAPOgFH7V2VEVbPt97iF_fLPTmO3R4VkcrLTQU4V_o4lGSGnFYYJX7fLnLstaAe-pEUb7VySlJ7j7JbkDZ9m_eoot_wgEBwJZz2N_R4tl59ohgBv0lQIfP3LiNRcqN4IOe5sfksFSonJYbjt0mGdF73sEadTVDyosPNWcXMg/https%3A%2F%2Fwww.cardiff.ac.uk%2Fpeople%2Fresearch-students%2Fview%2F974214-http://secure-web.cisco.com/1ICdtpf_Z8ofgCO9zVzO_3wNngyKa7KxDUhJmPUVnjviIbfaHq-IGlsyzG3nd-mlYfYNwq6o_F8bp9gpPsSbhQaGjHfwpbD8xqGnMm_fiY40oF1Wq6m-xBHm9yg_kY4DuIJenroOXiz3UsNn_fDUgefCDj50pscgN72j8mAPRjZI0Q0POwOUDu7MvDCnrSFNyj57FUG6eHUsNQGA5xm2kH1BJlSvwRCLQzi52mUdGRh_YJTfdfwWm4Mms8z2ACAbEzP9R5SOOxiyixaDwJQh6kQ/http%3A%2F%2Fwww.cardiff.ac.uk%2Fpeople%2Fresearch-students%2Fview%2F482937-
Mason T Wells, MSc
Myfyriwr PhD
Yr Ysgol Optometreg a Gwyddorau’r Golwg
& Canolfan Ymchwil Delweddu’r Ymennydd Prifysgol Caerdydd (CUBRIC), Yr Ysgol Seicoleg
Prifysgol Caerdydd
Heol Maindy
Caerdydd
CF24 4HQ
DU
E-bost: WellsMT1@caerdydd.ac.ukmailto:WellsMT1@caerdydd.ac.uk
Ffôn: 02920 879628
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Greve, Douglas N.,Ph.D. DGREVE@MGH.HARVARD.EDU Sent: Thursday, December 17, 2020 2:20 PM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Extracted mean timecourse from FS label
External email to Cardiff University - Take care when replying/opening attachments or links. Nid ebost mewnol o Brifysgol Caerdydd yw hwn - Cymerwch ofal wrth ateb/agor atodiadau neu ddolenni.
I don't know, that msg probably comes from the gifti code we link to. It looks like it is just a warning. Do the output waveforms look ok?
On 12/9/2020 6:05 AM, Mason Wells wrote:
External Email - Use Caution
Hi Experts,
I have pre-processed some resting-state date using fMRI prep. I have the functional data on the fs_native surface in bold.func.gii format for each hemisphere. I have created some FS labels and I would like to extract the mean time course from vertices within these labels. Is it possible to use FreeSurfer tools to do this? I have a feeling mri_segstats might be the correct option, but I don't believe this can be used with GIFTI functional data. I tried the command below
* mri_segstats --slabel sub-0006 lh /home/masontwells/Documents/freesurfer/subjects/sub-0006/label/lh.wang2015atlas.V1v.label --avgwf out.dat --id 1 --i ../../post-fmriprep/sub-0006_ses-1_task-rest_acq-TR2000_space-fsnative_hemi-L_bold.func.gii
However, the terminal produces serval of these messages when the command runs:
* ** DA[599] has coordsys with intent NIFTI_INTENT_TIME_SERIES (should be NIFTI_INTENT_POINTSET)
I assume this is a sign that the command and data format are not compatible? If this is the case, can you advise on the best way to extract the mean time courses from my functional data? Will I have to resample the volume data to the surface with mri_vol2surf to get it into MGH format and then run mri_segstats?
Best wishes, Mason
Mason T Wells, MSc
PhD student
School of Optometry and Vision Sciences
& Cardiff University Brain Research
Imaging Centre (CUBRIC), School of Psychology
Cardiff University
Cardiff
CF24 4HQ
UK
Email: WellsMT1@cardiff.ac.ukmailto:WellsMT1@cardiff.ac.uk
Tel: 02920 879628
Mason T Wells, MSc
Myfyriwr PhD
Yr Ysgol Optometreg a Gwyddorau’r Golwg
& Canolfan Ymchwil Delweddu’r Ymennydd Prifysgol Caerdydd (CUBRIC), Yr Ysgol Seicoleg
Prifysgol Caerdydd
Heol Maindy
Caerdydd
CF24 4HQ
DU
E-bost: WellsMT1@caerdydd.ac.ukmailto:WellsMT1@caerdydd.ac.uk
Ffôn: 02920 879628
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1a7FkujzMS2C-0hk4xPvHcoGCQV1SP99-BcerZD7KK7IVft...https://secure-web.cisco.com/15gK3Fj9kLn49KL-oq9nbLcVyKDwbYS5j5DlwNmFoij_XOajuGS82wOx_KwJtwdZ3T6cv7ftLA3D14KdWtheMY7nYO2FLUByTME53_tgdCAs8IkFtf526zri43Fjh-KFID4pcnBKN1nhCLqLQnyIrpAt_lNwnQ1jmqRByhy9CRYEGzPRzBv332FYZfkM6meuCenkeNeKULfB5YdQDbdmfNd5E9Jqt8JfqIUKiwgVCGpBpD9eFPuGT3zljUfmgIvaPi4d1tb_pWEW5PTR6MJF1zw/https%3A%2F%2Feur03.safelinks.protection.outlook.com%2F%3Furl%3Dhttps%253A%252F%252Fmail.nmr.mgh.harvard.edu%252Fmailman%252Flistinfo%252Ffreesurfer%26data%3D04%257C01%257CWellsMT1%2540cardiff.ac.uk%257Cb841ee27ba994f055d3708d8a2977e7a%257Cbdb74b3095684856bdbf06759778fcbc%257C1%257C0%257C637438118844796764%257CUnknown%257CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%253D%257C1000%26sdata%3DMlkJnUumAjJaPDbGsc%252BfYKQDDfCjKTSsU7D%252Fmo13o9Y%253D%26reserved%3D0
Sorry, I don't know the best way to test it. You might ask the fmriprep people
On 12/18/2020 7:05 AM, Mason Wells wrote:
External Email - Use Caution
Hi Doug,
The waveforms look OK to me but was worried that the message was suggesting the command was not suitable with GIFTI data. Is there a way I can double check I'm good to carry on with the extractions?
Cheers, Mason
Mason T Wells, MSc
PhD student
School of Optometry and Vision Sciences
& Cardiff University Brain Research
Imaging Centre (CUBRIC), School of Psychology
Cardiff University
Cardiff
CF24 4HQ
UK
Email: WellsMT1@cardiff.ac.ukmailto:WellsMT1@cardiff.ac.uk
Tel: 02920 879628
Mason T Wells, MSc
Myfyriwr PhD
Yr Ysgol Optometreg a Gwyddorau’r Golwg
& Canolfan Ymchwil Delweddu’r Ymennydd Prifysgol Caerdydd (CUBRIC), Yr Ysgol Seicoleg
Prifysgol Caerdydd
Heol Maindy
Caerdydd
CF24 4HQ
DU
E-bost: WellsMT1@caerdydd.ac.ukmailto:WellsMT1@caerdydd.ac.uk
Ffôn: 02920 879628
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Greve, Douglas N.,Ph.D. DGREVE@MGH.HARVARD.EDUmailto:DGREVE@MGH.HARVARD.EDU Sent: Thursday, December 17, 2020 2:20 PM To: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Extracted mean timecourse from FS label
External email to Cardiff University - Take care when replying/opening attachments or links. Nid ebost mewnol o Brifysgol Caerdydd yw hwn - Cymerwch ofal wrth ateb/agor atodiadau neu ddolenni.
I don't know, that msg probably comes from the gifti code we link to. It looks like it is just a warning. Do the output waveforms look ok?
On 12/9/2020 6:05 AM, Mason Wells wrote:
freesurfer@nmr.mgh.harvard.edu
-
Greve, Douglas N.,Ph.D. -
Mason Wells