Dear all,
in the process of understanding freesurfer I like to see/inspect the created transforms visually. However, so far I am not able to see all the data that is stored in the transforms folder. So is it possible to see files like /transforms/lh.curv or /transfroms/lh.sulc? And if yes, what is the programm and command order? So far, I only figured out how to see data like /transforms/lh.pial lh.orig lh.inflated and so on. Thanks a lot, Maria
Hi Maria,
those files don't live in the transforms dir, they live in the surf dir. Further, pial, inflated and orig are surfaces with geometry and topology information, but sulc and curv are just scalar fields over the surface. You can display them on any of the surfaces using file->load curvature in tksurfer
cheers Bruce
On Fri, 2 Dec 2011, Maria Felber wrote:
Dear all,
in the process of understanding freesurfer I like to see/inspect the created transforms visually. However, so far I am not able to see all the data that is stored in the transforms folder. So is it possible to see files like /transforms/lh.curv or /transfroms/lh.sulc? And if yes, what is the programm and command order? So far, I only figured out how to see data like /transforms/lh.pial lh.orig lh.inflated and so on. Thanks a lot, Maria
Dear Bruce,
thanks again for your quick help. And sorry for mixing up the directories. Best, Maria
----- Original Message ----- From: "Bruce Fischl" fischl@nmr.mgh.harvard.edu To: "Maria Felber" felber@cbs.mpg.de Cc: freesurfer@nmr.mgh.harvard.edu Sent: Friday, December 2, 2011 4:25:10 PM Subject: Re: [Freesurfer] how to make lh.curv lh.sulc visible
Hi Maria,
those files don't live in the transforms dir, they live in the surf dir. Further, pial, inflated and orig are surfaces with geometry and topology information, but sulc and curv are just scalar fields over the surface. You can display them on any of the surfaces using file->load curvature in tksurfer
cheers Bruce
On Fri, 2 Dec 2011, Maria Felber wrote:
Dear all,
in the process of understanding freesurfer I like to see/inspect the created transforms visually. However, so far I am not able to see all the data that is stored in the transforms folder. So is it possible to see files like /transforms/lh.curv or /transfroms/lh.sulc? And if yes, what is the programm and command order? So far, I only figured out how to see data like /transforms/lh.pial lh.orig lh.inflated and so on. Thanks a lot, Maria
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
no problem, it happens On Fri, 2 Dec 2011, Maria Felber wrote:
Dear Bruce,
thanks again for your quick help. And sorry for mixing up the directories. Best, Maria
----- Original Message ----- From: "Bruce Fischl" fischl@nmr.mgh.harvard.edu To: "Maria Felber" felber@cbs.mpg.de Cc: freesurfer@nmr.mgh.harvard.edu Sent: Friday, December 2, 2011 4:25:10 PM Subject: Re: [Freesurfer] how to make lh.curv lh.sulc visible
Hi Maria,
those files don't live in the transforms dir, they live in the surf dir. Further, pial, inflated and orig are surfaces with geometry and topology information, but sulc and curv are just scalar fields over the surface. You can display them on any of the surfaces using file->load curvature in tksurfer
cheers Bruce
On Fri, 2 Dec 2011, Maria Felber wrote:
Dear all,
in the process of understanding freesurfer I like to see/inspect the created transforms visually. However, so far I am not able to see all the data that is stored in the transforms folder. So is it possible to see files like /transforms/lh.curv or /transfroms/lh.sulc? And if yes, what is the programm and command order? So far, I only figured out how to see data like /transforms/lh.pial lh.orig lh.inflated and so on. Thanks a lot, Maria
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
-
Bruce Fischl -
Maria Felber