Hi

I have two different folders where one is processed by recon-all 4.3 and another by recon-all 5.1. When I compare these two folders I get similar results for fwhm 30 for group difference which is survives fdr, but when I compare results that are do not survived fdr I get very different results. Is there anything wrong? The folder where I used recon-all 5.1 has all automatic segmentation with manual pial surface edit, while the other have manual editions of putamen and manual segmentation of corpus callosum.

Knut J