Hi Vanessa,

it looks like the error must have occurred earlier in the process as the input to mri_cc can't be read. Can you send the whole recon-all.log?

cheers Bruce On Thu, 16 Jun 2011, Vanessa Lim wrote:

Hi,

does anyone know what to do here please? I can see it in file manager.

mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz CG will read input aseg from aseg.auto_noCCseg.mgz writing aseg with cc labels to aseg.auto.mgz reading aseg from /home/virtualuser/Desktop/freeSurfer/CG/CG/mri/aseg.auto_noCCseg.mgz mghRead(/home/virtualuser/Desktop/freeSurfer/CG/CG/mri/aseg.auto_noCCseg.mgz, -1): could not open file mri_cc: could not read aseg volume from /home/virtualuser/Desktop/freeSurfer/CG/CG/mri/aseg.auto_noCCseg.mgz

also assuming I fix this error how do I resume from this point (or another point) the rest of recon-all autorecon2?

Thanks,

Vanessa