Hello,
I’ve got a question concerning qdec running with freesurfer. I just downloaded the latest version of freesurfer.
Before to run qdec, I read than I have to run "recon-all -s ID -all" (about 7 hours) and then recon-all -s ID -qcache (about 5'). So I tried it with one subject and everything is fine. Indeed, I got the files like *.fwhm5.fsaverage.mgh, *.fwhm10.fsaverage.mgh, *.fwhm20.fsaverage.mgh, etc... in the surf folder absolutely necessary for qdec.
My question is very simple : I have already treated all my subjects (n = 45) two years ago. Today, I would like to use qdec. Do I need to restart *for each subject* all my preprocessing with recon-all -s ID -all followed by recon-all -s ID -qcache ? or Is there a routine faster to get the smoothed surfaces for each subject ?
Many thank for any advice.
Best wishes and happy new year.
Giovanni
If you are asking whether you can mix versions of FS, the answer is no. You should analyze all your data using a single version.
On 12/30/17 3:27 AM, Giovanni de Marco wrote:
Hello,
I’ve got a question concerning qdec running with freesurfer. I just downloaded the latest version of freesurfer.
Before to run qdec, I read than I have to run "recon-all -s ID -all" (about 7 hours) and then recon-all -s ID -qcache (about 5'). So I tried it with one subject and everything is fine. Indeed, I got the files like *.fwhm5.fsaverage.mgh, *.fwhm10.fsaverage.mgh, *.fwhm20.fsaverage.mgh, etc... in the surf folder absolutely necessary for qdec.
My question is very simple : I have already treated all my subjects (n = 45) two years ago. Today, I would like to use qdec. Do I need to restart _for each subject_ all my preprocessing with recon-all -s ID -allfollowed by recon-all -s ID -qcache ? or Is there a routine faster to get the smoothed surfaces for each subject ?
Many thank for any advice.
Best wishes and happy new year.
Giovanni
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freesurfer@nmr.mgh.harvard.edu