Use mri_vol2vol, something like

mri_vol2vol --mov fa.nii --reg register.dat --fstarg --o fa.anat.nii

doug

Victoria Williams wrote:

Hello,

I used bbregister to create a register.dat file aligning a subject's T2(lowb) dti image to their FreeSurfer orig volume. I am now wondering with what command can I apply this register.dat file to the other diffusion measures such as FA to bring them into alignment with the orig, as they are identical and thus use the same registration as the lowb? I would ideally like to save the transformed diffusion measure volumes as a new volume so I can run segstats to extract the wmparc segmentation means.

Thanks in advance!! Tori _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer