I'm not sure if this is it's similar to my problem yesterday in that I just need to choose a new set of dicoms- in this case, possibly a different set of CT dicoms?

thanks, m ________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Borzello, Mia Sent: Tuesday, May 15, 2012 9:56 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] confusion with tkregister2

Morning all,

I ran the recon yesterday, and it says it ran without error. I am now running tkregister2, but for some reason when i compare the coronal view, things look okay on the mri, but it looks like the axial view for the CT. I'm not sure in which step this happened?

Thanks, Mia

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