Dear Doug and Freesurfers,
I am attempting to run funcroi-table-sess on a set of subjects but keep getting an error message I've never seen before:
funcroi-table-sess -roi /cluster/roffman/users/Stable5_PerRun/ROI_Analysis/FB12/ctx.lh.insula.aparc+aseg_2vFix.roicfg -sf /cluster/roffman/users/Stable5_PerRun/Subject_Files/30_ActiveFolateAndPlacebo_PostPrePAIRED -c Cond2vFix -o /cluster/roffman/users/Stable5_PerRun/ROI_Analysis/FB12/18ActiveFolate_12Placebo_PreAndPost_7Tpost/ctx_lh_insula_aparc+aseg_2vFix
log/funcroi-table-sess.log log/funcroi-table-sess.log: No such file or directory.
Funcroi-sess ran without error, as did funcroi-config. I've run this analysis many times in the past and have never had this problem so I am at a loss as to what is going wrong. Any help would be greatly appreciated!
Thanks, Alex
Hi Alex, are you running it from the project folder? It is looking for a folder called "log" in the current directory. It should be creating this folder (bug). So, if you run it from the project folder, the log folder will be there. Or can create a log folder in your current directory (mkdir log)
doug
On 7/30/13 2:03 PM, Alexandra Tanner wrote:
Dear Doug and Freesurfers,
I am attempting to run funcroi-table-sess on a set of subjects but keep getting an error message I've never seen before:
funcroi-table-sess -roi /cluster/roffman/users/Stable5_PerRun/ROI_Analysis/FB12/ctx.lh.insula.aparc+aseg_2vFix.roicfg -sf /cluster/roffman/users/Stable5_PerRun/Subject_Files/30_ActiveFolateAndPlacebo_PostPrePAIRED -c Cond2vFix -o /cluster/roffman/users/Stable5_PerRun/ROI_Analysis/FB12/18ActiveFolate_12Placebo_PreAndPost_7Tpost/ctx_lh_insula_aparc+aseg_2vFix
log/funcroi-table-sess.log log/funcroi-table-sess.log: No such file or directory.
Funcroi-sess ran without error, as did funcroi-config. I've run this analysis many times in the past and have never had this problem so I am at a loss as to what is going wrong. Any help would be greatly appreciated!
Thanks, Alex
Hi Doug,
I was running the command out of the $SUBJECTS_DIR. I created a log folder in the $SUBJECTS_DIR and then the command ran smoothly! Thanks!
Best, Alex
Hi Alex, are you running it from the project folder? It is looking for a folder called "log" in the current directory. It should be creating this folder (bug). So, if you run it from the project folder, the log folder will be there. Or can create a log folder in your current directory (mkdir log)
doug
On 7/30/13 2:03 PM, Alexandra Tanner wrote:
Dear Doug and Freesurfers,
I am attempting to run funcroi-table-sess on a set of subjects but keep getting an error message I've never seen before:
funcroi-table-sess -roi /cluster/roffman/users/Stable5_PerRun/ROI_Analysis/FB12/ctx.lh.insula.aparc+aseg_2vFix.roicfg -sf /cluster/roffman/users/Stable5_PerRun/Subject_Files/30_ActiveFolateAndPlacebo_PostPrePAIRED -c Cond2vFix -o /cluster/roffman/users/Stable5_PerRun/ROI_Analysis/FB12/18ActiveFolate_12Placebo_PreAndPost_7Tpost/ctx_lh_insula_aparc+aseg_2vFix
log/funcroi-table-sess.log log/funcroi-table-sess.log: No such file or directory.
Funcroi-sess ran without error, as did funcroi-config. I've run this analysis many times in the past and have never had this problem so I am at a loss as to what is going wrong. Any help would be greatly appreciated!
Thanks, Alex
freesurfer@nmr.mgh.harvard.edu