Hi,
I am experiencing an issue where I try to save a point in an inflated brain view and go to the saved point on my brainmask/wm volume and the point is jumping to a space off of the brain. This happens consistently. Am I doing something wrong or is this a bug?
Thank you, Alexander
Hi Alexander
do you see any error messages in the terminal window where you started tksurfer?
Bruce
On Mon, 27 Jan 2014, Denker, Alexander (NIH/NIMH) [F] wrote:
Hi,
I am experiencing an issue where I try to save a point in an inflated brain view and go to the saved point on my brainmask/wm volume and the point is jumping to a space off of the brain. This happens consistently. Am I doing something wrong or is this a bug?
Thank you, Alexander
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
I was strictly using the freeview GUI and not tksurfer so I didn¹t notice any error messages.
Alexander
On 1/27/14, 12:10 PM, "Bruce Fischl" fischl@nmr.mgh.harvard.edu wrote:
Hi Alexander
do you see any error messages in the terminal window where you started tksurfer?
Bruce
On Mon, 27 Jan 2014, Denker, Alexander (NIH/NIMH) [F] wrote:
Hi,
I am experiencing an issue where I try to save a point in an inflated brain view and go to the saved point on my brainmask/wm volume and the point is jumping to a space off of the brain. This happens consistently. Am I doing something wrong or is this a bug?
Thank you, Alexander
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Would it be possible to share the data that shows this issue? Or does it happen to any volume you are viewing with freeview?
Ruopeng
On 01/27/2014 12:47 PM, Denker, Alexander (NIH/NIMH) [F] wrote:
I was strictly using the freeview GUI and not tksurfer so I didn¹t notice any error messages.
Alexander
On 1/27/14, 12:10 PM, "Bruce Fischl" fischl@nmr.mgh.harvard.edu wrote:
Hi Alexander
do you see any error messages in the terminal window where you started tksurfer?
Bruce
On Mon, 27 Jan 2014, Denker, Alexander (NIH/NIMH) [F] wrote:
Hi,
I am experiencing an issue where I try to save a point in an inflated brain view and go to the saved point on my brainmask/wm volume and the point is jumping to a space off of the brain. This happens consistently. Am I doing something wrong or is this a bug?
Thank you, Alexander
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
I think this is a known issue. When you click on the inflated surface, it uses the xyz for the vertex on the inflated surface. tksurfer uses the orig or the white. I think it is possible to click on the inflated, then go to the white (where the cursor should still be at the same vertex?), the hit save point
On 01/27/2014 01:23 PM, Ruopeng Wang wrote:
Would it be possible to share the data that shows this issue? Or does it happen to any volume you are viewing with freeview?
Ruopeng
On 01/27/2014 12:47 PM, Denker, Alexander (NIH/NIMH) [F] wrote:
I was strictly using the freeview GUI and not tksurfer so I didn¹t notice any error messages.
Alexander
On 1/27/14, 12:10 PM, "Bruce Fischl" fischl@nmr.mgh.harvard.edu wrote:
Hi Alexander
do you see any error messages in the terminal window where you started tksurfer?
Bruce
On Mon, 27 Jan 2014, Denker, Alexander (NIH/NIMH) [F] wrote:
Hi,
I am experiencing an issue where I try to save a point in an inflated brain view and go to the saved point on my brainmask/wm volume and the point is jumping to a space off of the brain. This happens consistently. Am I doing something wrong or is this a bug?
Thank you, Alexander
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
It seems to be happening with all of our volumes.
On 1/27/14, 1:23 PM, "Ruopeng Wang" rpwang@nmr.mgh.harvard.edu wrote:
Would it be possible to share the data that shows this issue? Or does it happen to any volume you are viewing with freeview?
Ruopeng
On 01/27/2014 12:47 PM, Denker, Alexander (NIH/NIMH) [F] wrote:
I was strictly using the freeview GUI and not tksurfer so I didn¹t notice any error messages.
Alexander
On 1/27/14, 12:10 PM, "Bruce Fischl" fischl@nmr.mgh.harvard.edu wrote:
Hi Alexander
do you see any error messages in the terminal window where you started tksurfer?
Bruce
On Mon, 27 Jan 2014, Denker, Alexander (NIH/NIMH) [F] wrote:
Hi,
I am experiencing an issue where I try to save a point in an inflated brain view and go to the saved point on my brainmask/wm volume and the point is jumping to a space off of the brain. This happens consistently. Am I doing something wrong or is this a bug?
Thank you, Alexander
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Is there a way to accomplish this successfully in FreeView or is it easier to still do this in tksurfer? I have attached a screenshot of what it looks like when I try to click “go-to point” in FreeView.
------------- Date: Mon, 27 Jan 2014 13:31:54 -0500 From: Douglas N Greve greve@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Freeview Save and Go-to Point Issue To: freesurfer@nmr.mgh.harvard.edu Message-ID: 52E6A61A.2090909@nmr.mgh.harvard.edu Content-Type: text/plain; charset=ISO-8859-1; format=flowed
I think this is a known issue. When you click on the inflated surface, it uses the xyz for the vertex on the inflated surface. tksurfer uses the orig or the white. I think it is possible to click on the inflated, then go to the white (where the cursor should still be at the same vertex?), the hit save point
On 1/27/14, 1:32 PM, "Denker, Alexander (NIH/NIMH) [F]" alexander.denker@nih.gov wrote:
It seems to be happening with all of our volumes.
On 1/27/14, 1:23 PM, "Ruopeng Wang" rpwang@nmr.mgh.harvard.edu wrote:
Would it be possible to share the data that shows this issue? Or does it happen to any volume you are viewing with freeview?
Ruopeng
On 01/27/2014 12:47 PM, Denker, Alexander (NIH/NIMH) [F] wrote:
I was strictly using the freeview GUI and not tksurfer so I didn¹t notice any error messages.
Alexander
On 1/27/14, 12:10 PM, "Bruce Fischl" fischl@nmr.mgh.harvard.edu wrote:
Hi Alexander
do you see any error messages in the terminal window where you started tksurfer?
Bruce
On Mon, 27 Jan 2014, Denker, Alexander (NIH/NIMH) [F] wrote:
Hi,
I am experiencing an issue where I try to save a point in an inflated brain view and go to the saved point on my brainmask/wm volume and the point is jumping to a space off of the brain. This happens consistently. Am I doing something wrong or is this a bug?
Thank you, Alexander
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
you don't really need save and goto in freeview since you can load the surfaces and the volumes together. The easiest thing to do is to copy the vertex number from where you click on the inflated (in inflated part of the info panel), then paste that into the white surface info panel so that the view jumps to the corresponding spot
On Tue, 28 Jan 2014, Denker, Alexander (NIH/NIMH) [F] wrote:
Is there a way to accomplish this successfully in FreeView or is it easier to still do this in tksurfer? I have attached a screenshot of what it looks like when I try to click “go-to point” in FreeView.
Date: Mon, 27 Jan 2014 13:31:54 -0500 From: Douglas N Greve greve@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Freeview Save and Go-to Point Issue To: freesurfer@nmr.mgh.harvard.edu Message-ID: 52E6A61A.2090909@nmr.mgh.harvard.edu Content-Type: text/plain; charset=ISO-8859-1; format=flowed
I think this is a known issue. When you click on the inflated surface, it uses the xyz for the vertex on the inflated surface. tksurfer uses the orig or the white. I think it is possible to click on the inflated, then go to the white (where the cursor should still be at the same vertex?), the hit save point
On 1/27/14, 1:32 PM, "Denker, Alexander (NIH/NIMH) [F]" alexander.denker@nih.gov wrote:
It seems to be happening with all of our volumes.
On 1/27/14, 1:23 PM, "Ruopeng Wang" rpwang@nmr.mgh.harvard.edu wrote:
Would it be possible to share the data that shows this issue? Or does it happen to any volume you are viewing with freeview?
Ruopeng
On 01/27/2014 12:47 PM, Denker, Alexander (NIH/NIMH) [F] wrote:
I was strictly using the freeview GUI and not tksurfer so I didn¹t notice any error messages.
Alexander
On 1/27/14, 12:10 PM, "Bruce Fischl" fischl@nmr.mgh.harvard.edu wrote:
Hi Alexander
do you see any error messages in the terminal window where you started tksurfer?
Bruce
On Mon, 27 Jan 2014, Denker, Alexander (NIH/NIMH) [F] wrote:
Hi,
I am experiencing an issue where I try to save a point in an inflated brain view and go to the saved point on my brainmask/wm volume and the point is jumping to a space off of the brain. This happens consistently. Am I doing something wrong or is this a bug?
Thank you, Alexander
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Bruce Fischl -
Denker, Alexander (NIH/NIMH) [F] -
Douglas N Greve -
Ruopeng Wang