Dear Freesurfers,
I ran a comparison between different groups using mri_glmfit. Now I would like to correct the results in sig.mgh by multiple comparisons using FDR. I tried using tksurfer but it doesn't work so well on my computer and I read that freeview does not allow to do that yet.
I'm now trying to use mri_surfcluster to do it. Is this correct? mri_surfcluster --in sig.mgh --subject fsaverage --surf inflated --hemi lh --fdr 0.05 --sign pos
After I run it some thresholds appear in the terminal. Should I use these thresholds to create a FDR corrected sig.mgh map or is there a direct way of getting this using mri_surfcluster or other command?
Thank you so much!
use this program
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_fdr
On 7/6/16 9:22 AM, tom parker wrote:
Dear Freesurfers,
I ran a comparison between different groups using mri_glmfit. Now I would like to correct the results in sig.mgh by multiple comparisons using FDR. I tried using tksurfer but it doesn't work so well on my computer and I read that freeview does not allow to do that yet.
I'm now trying to use mri_surfcluster to do it. Is this correct? mri_surfcluster --in sig.mgh --subject fsaverage --surf inflated --hemi lh --fdr 0.05 --sign pos
After I run it some thresholds appear in the terminal. Should I use these thresholds to create a FDR corrected sig.mgh map or is there a direct way of getting this using mri_surfcluster or other command?
Thank you so much!
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freesurfer@nmr.mgh.harvard.edu
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Douglas Greve -
tom parker